Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02500 ATGGCGGGGAAGGTGTCGAAGGCGGCCTTCGACGCTAAGATGTGGAAACTACTGAGGGACTACAGCCAGGTCCTGGTGGTTACCTCCGATAACGTCGGTTCCAACCAGATAAACGGCATTCGGAGGGGTTTGAAGGGCGATTCTGTGGTCGTGATGGGTAAGAACTCCATGATGAGACGCTCTTTCACGCTCCAAGCTCAGAGGACTGGAAACAAGTCTTTTCTCAACCTTATCCCTCTTCTTAGGGGAAATGTGGCTTTGATTTTCACGAAAGGGGATATGAAGGAGGTTAGCAATGAGGTTGCCAAGTTCAAGGTTGTTGATCCTCTTCTCATGTGCCCCAAGTACTTATCATATGAATCGTACCGCAATTGTTCCTACATGCAATCTGGACAGTTACCTTTGGGCCTCAAGTGTTGTAATCAGCAGTCGTCGCAGGATTCGGAGCCCTTTCTTGTATGCTCAAAATTCACTCCGCACCAGCATTGTTTCATGCAGAGATCAAAACAGTTCTTGGCAATGAGTGTATGGTCTCCTCTTCTCCTTTTAGCTGGGAGCTTGTGA 564 0.4823 MAGKVSKAAFDAKMWKLLRDYSQVLVVTSDNVGSNQINGIRRGLKGDSVVVMGKNSMMRRSFTLQAQRTGNKSFLNLIPLLRGNVALIFTKGDMKEVSNEVAKFKVVDPLLMCPKYLSYESYRNCSYMQSGQLPLGLKCCNQQSSQDSEPFLVCSKFTPHQHCFMQRSKQFLAMSVWSPLLLLAGSL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02500 187 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 185 - -
Aip06g02500 187 Gene3D - 4 118 IPR043141 -
Aip06g02500 187 Pfam Ribosomal protein L10 6 104 IPR001790 -
Aip06g02500 187 SUPERFAMILY Ribosomal protein L10-like 7 105 IPR043141 -
Aip06g02500 187 PANTHER RIBOSOMAL PROTEIN L10P-RELATED 1 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02500 Aip-Chr6 111390983 111393248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02500 1 109 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 61.062 3.95e-43 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02500 K02941 - rcu:8270447 149.828