Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02495 ATGGAAATTCATTTCCAGCAACCAAATCTTGAGCATAATAACAAAAGTAACAAGAAGAATCCAGGAATTGGGATCAGCAAAGGAAACAAATTCAAAGGAAGAAGCAAAACCAACAACAACAACACTGGAAACAAATTTGTTGGAGTGAGGCAGAGGCCTTCAGGGAGATGGGTGGCAGAGATCAAGGACACAACACAAAAGATAAGAATGTGGCTCGGAACATTCGAGACGGCTGAAGAGGCGGCCAGAGCCTACGACGAAGCCGCCTGCCTCCTCCGCGGATCAAACACTCGGACTAACTTTATCACTCATGTCTCCACGGATTCTCCCCTGGCTTCACGCATCAGGAACCTTCTCAACGACAAAAAAGGCATCAAAAAACAAGAAAACAGTGTTGTTGCTTGCGCCCCAAGAATCCTTGGCAGTTCTAGCTCAAGTTCAACAAACAATGATAAAATTGAGAAGTCTGTTCCACAAGTAGTGCGTGATGATGCTTATAAACCGGACTTGAGCAGCTGCGAGATGAATCCACAACAAAGTAATAGTTTCTGGTGGGATTTCGGACCCATCTTCGACCGCCTTCCGTTTGCTAATCATTTACTTGACGGCACAACTGACATGGAGCTTCTGGAATTTGAAAGAATGAAGGTTGAAAGACAAATTTCAGCTTCACTTTATGCCATTAATGGAGTTCACGAGTACATGGAAACTCTTCAGGAATCTAATAACGAACCTATTTGGGATCTTCCACCTTTGTGCTCCTTATTCTGCTAA 774 0.438 MEIHFQQPNLEHNNKSNKKNPGIGISKGNKFKGRSKTNNNNTGNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSTDSPLASRIRNLLNDKKGIKKQENSVVACAPRILGSSSSSSTNNDKIEKSVPQVVRDDAYKPDLSSCEMNPQQSNSFWWDFGPIFDRLPFANHLLDGTTDMELLEFERMKVERQISASLYAINGVHEYMETLQESNNEPIWDLPPLCSLFC 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02495 257 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Aip06g02495 257 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Aip06g02495 257 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Aip06g02495 257 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 26 242 - -
Aip06g02495 257 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Aip06g02495 257 CDD AP2 46 101 IPR001471 GO:0003700|GO:0006355
Aip06g02495 257 MobiDBLite consensus disorder prediction 1 23 - -
Aip06g02495 257 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Aip06g02495 257 MobiDBLite consensus disorder prediction 1 50 - -
Aip06g02495 257 MobiDBLite consensus disorder prediction 31 48 - -
Aip06g02495 257 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Aip06g02495 257 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 242 - -
Aip06g02495 257 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02495 Aip-Chr6 111207117 111208192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02495 30 257 AP2-EREBP Transcription Factor Family AT5G19790 46.640 3.25e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip06g02495 AP2 5.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02495 K09286 - gmx:100796898 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02495 06 111207117 111208192 Aip06g02495 06 111207117 111208192 ECH
Aip06g02495 06 111207117 111208192 Aip10g03447 10 133019907 133021106 PCT