Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02494 ATGATCTCCCGCTACAGCATAGTCCAATCTCACCACCCTAATTTCACAATCTCATACCTGATTGACTCATGTGGTCTCTCTCCAGACACTGCTACTCTTACTTTCCAAAAGCTTCACCTTCAAAGACCAGACTCAGTTCTCACCCTTCTCAGGGAGCATGGTTTCATAGATACCCAGATTTCAAATCTCATCAGAAAACGCCCATTGCTCCTCTTAGCAAACCTAGATATCCTCTTGCCAAAGTTTCAATTTTTTCTCTCCATTGGGATTTCCAATACCAACCTCGCAAGAACCCTAACCGCTGACCCAACCCTTTTGACCCGGAGCTTGGAGAAACAGATCATACCCTCTTACAATTTCCTCAAGAGTGTGTTGATTTCTGATGAAAAGGTTGCAGCTTCATTGAAGCACACATCTTGGGTCTTCCTCGAAGATCACAAGAAGAACCTCGTACCAAACCTCAATCTCCTAAAAGAGATGGATGTTCCTGAATCATGTGTTACGCTGTTACTGACTCATTTTCCGGAGGCATTGATGCAGAAAAAGGAAAACTTTGCAAAGCTTTCTAAGGAGATTAAAGAAATGGGGTTTAATCCAAAAAAGACAACTTTTGTGTTGGCCATTCATGTGTTCTCAGGTGAGGGTAACAAATCCATATATAACCGCTGTTACGAGGTTTATAAGAGGTGGGGTTGGTCAGATGATGACATCCTTATGGCATTCAAGAAGCACCCACATTGTATGATACTTTCAGAGGATAAGATAATGAAGACAATGGATTACTTGGTGAATAAGATGGGTTGGCTTTCAGGGATGATTGTTAGGTGCCCAGTGGTGTTGTTTTTTAGCTTGGAGAAGAGAATTAAACTTAGTTTCTTGGAGAAGTATGTGATCAAGTATGAGCTGCAGGTGAATCGAGTTTGGGAAGTAGAAGGAAAGGTGGTCAGGGGTGGAATGAGGGGGTGCGGTGGAGGTGGGAGGAATGAAGGTGAGAGAGAGAAGCAGGAGCAGAGGAGGGAGACGAAAAGGCATATTAGTGAATCTGTGAATGTACCAACTACCAAGCGTCCAACTGTCCAAGACTCCAGTCTGCAGGAGGAGGCAGTAACCAGCAGCAGTGTGGCACCCAACAGGCAGCAAGGACGAAGAGGGTGCGGCGCGCAGCAAGCAACAGGGATGAAGAGACTCGAGAAGCTGAAGACTGAAGAGGTAAGGTGTGGTAACTGA 1227 0.4499 MISRYSIVQSHHPNFTISYLIDSCGLSPDTATLTFQKLHLQRPDSVLTLLREHGFIDTQISNLIRKRPLLLLANLDILLPKFQFFLSIGISNTNLARTLTADPTLLTRSLEKQIIPSYNFLKSVLISDEKVAASLKHTSWVFLEDHKKNLVPNLNLLKEMDVPESCVTLLLTHFPEALMQKKENFAKLSKEIKEMGFNPKKTTFVLAIHVFSGEGNKSIYNRCYEVYKRWGWSDDDILMAFKKHPHCMILSEDKIMKTMDYLVNKMGWLSGMIVRCPVVLFFSLEKRIKLSFLEKYVIKYELQVNRVWEVEGKVVRGGMRGCGGGGRNEGEREKQEQRRETKRHISESVNVPTTKRPTVQDSSLQEEAVTSSSVAPNRQQGRRGCGAQQATGMKRLEKLKTEEVRCGN 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02494 408 MobiDBLite consensus disorder prediction 326 346 - -
Aip06g02494 408 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
Aip06g02494 408 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Aip06g02494 408 SMART mt_12 168 198 IPR003690 GO:0003690|GO:0006355
Aip06g02494 408 SMART mt_12 238 269 IPR003690 GO:0003690|GO:0006355
Aip06g02494 408 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Aip06g02494 408 SMART mt_12 61 91 IPR003690 GO:0003690|GO:0006355
Aip06g02494 408 MobiDBLite consensus disorder prediction 319 408 - -
Aip06g02494 408 Pfam mTERF 47 199 IPR003690 GO:0003690|GO:0006355
Aip06g02494 408 Pfam mTERF 174 289 IPR003690 GO:0003690|GO:0006355
Aip06g02494 408 Gene3D Transcription termination factor 3, mitochondrial 108 303 IPR038538 -
Aip06g02494 408 PANTHER CGI-12 PROTEIN-RELATED 8 288 IPR003690 GO:0003690|GO:0006355
Aip06g02494 408 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 8 288 - -
Aip06g02494 408 MobiDBLite consensus disorder prediction 347 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02494 Aip-Chr6 111195601 111199033 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip06g02494 mTERF 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02494 K15032 - ahf:112805356 407.142