Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02492 ATGAGCAAGAGTAGTGCTACTACCACACCGTGCTGCAGCAAAGTTGGGATCAAGAAAGGACCATGGAGTGCCGAGGAAGACGAGATCCTGTCCAAATTTGTCCAGAAGGAAGGGGAGGGGCGGTGGCGTACGCTCCCCAAGCGGGCCGGGCTGCAGCGCTGCGGCAAGAGTTGCCGCCTCCGCTGGATGAACTATCTCCGCCCCTCCGTGAAGCGAGGCCAGATCGCTCCTGACGAGGAGGATCTCATCCTCCGCCTTCACCGTCTCTTGGGCAACAGGTGGGCTTTGATAGCTGGCAGATTACCTGGGAGGACTGATAACGAGATCAAGAATTACTGGAATACCCATCTAAGCAAGAAGCTCATAAAGCGAGGCATAGATCCAAGAACCCATAAGCCATTAATCACCACCAATTATTCTACTCATGTTACTACTTCAAATGGAGGTGTTTTTCATCATCATGATCAACATTCAAATGTAACCTCTTCAATCATAATGCCGCTGCAGCAACAACCTACGATGACTGTGAATCCTGCGTCAGAAATTGGTAATGTCAACAACAGCAAATTTGATTATGCTCCAATAATTAGTGCTGGTGGGAACATTATGGAAGAGAATAATAATAACAATAATGTTGTTGTTGATTATCATCATCATGGCGGAAATAATGGGAATAATAATAATGATGTTGAGGAGGAAGATACATTGTTGGTTTTTCTGAATTCTTTATTTGATGGTGGTAACAATGAAGTGATGAATAACAATAATAATAATAATGATAATAGTGGAACAGACGAATTAGCGGCGTTTCAGCATCATCATGATGATCAGGATGATGTTACAATGTTCCCTCCACCGCTTTCAACATCTTTTCGTCTTGAAGATTGGGAAGCTGAATTCAGCAATGCACTTATAAATCAACAAGATGGTTCATCATCATCATCACCTCCTAATAAGTAA 960 0.4354 MSKSSATTTPCCSKVGIKKGPWSAEEDEILSKFVQKEGEGRWRTLPKRAGLQRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWALIAGRLPGRTDNEIKNYWNTHLSKKLIKRGIDPRTHKPLITTNYSTHVTTSNGGVFHHHDQHSNVTSSIIMPLQQQPTMTVNPASEIGNVNNSKFDYAPIISAGGNIMEENNNNNNVVVDYHHHGGNNGNNNNDVEEEDTLLVFLNSLFDGGNNEVMNNNNNNNDNSGTDELAAFQHHHDDQDDVTMFPPPLSTSFRLEDWEAEFSNALINQQDGSSSSSPPNK 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02492 319 Gene3D - 75 142 - -
Aip06g02492 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Aip06g02492 319 SMART sant 18 68 IPR001005 -
Aip06g02492 319 SMART sant 71 119 IPR001005 -
Aip06g02492 319 Gene3D - 18 71 - -
Aip06g02492 319 PANTHER TRANSCRIPTION REPRESSOR MYB5-LIKE 6 263 - -
Aip06g02492 319 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Aip06g02492 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Aip06g02492 319 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Aip06g02492 319 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Aip06g02492 319 Pfam Myb-like DNA-binding domain 76 117 IPR001005 -
Aip06g02492 319 SUPERFAMILY Homeodomain-like 16 113 IPR009057 -
Aip06g02492 319 CDD SANT 77 117 IPR001005 -
Aip06g02492 319 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 263 - -
Aip06g02492 319 CDD SANT 21 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02492 Aip-Chr6 111147482 111148516 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02492 5 149 MYB Transcription Factor Family AT3G13540 75.172 4.47e-80 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip06g02492 Myb_DNA-binding 7.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02492 K09422 - egr:104443016 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02492 06 111147482 111148516 Aip06g02492 06 111147482 111148516 ECH