Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02480 ATGGTAGTAACAATCGATCGTTCTTACACGATAACCCCCTCAGATTCCTCTTCCACTACAATAATCCCTTTGTCACACTGTGATCAAACCAAGCTTCCAAACCATGGATCCCAACTTTCTCTCTACACCACTTCTAATTCCTCTTCTTCAATGGAAAATCTCAGAGCCTCACTCAGCAAAGCCTTGAATCTCTACTACCCTTTAGCCGGTCGACTCAGATGGATCCATGGCGGTCGATTACAACTTCTCTGCAACTCAAAGGGCGTCACACTATTGGAAGCCACGTGTCACGATAATCATACAACCTTGGACATGCTTCTCGAAAACCTTGATAACAATGTTTTGTTGGAACAGTTTTTGCCCAAGGTTGACTATAGCGTTGACCGTATTGACGACATGCCGTTGATGGCGGCACAATTCACGAGGCTTCCGGGCAACGGCGTCGTTTTGGGGATGATTATTTGTCGTGCTGTGGTTGACGGAGCCGCTCTTGGGAATTTCATTTGTTCATGGTCAAAATTGGCGAGAGGTGAAGATTTGGATTCGAGTTTGGTTCCGTTTTACGATCGAGGGTTGTTGGATTCGCTTGGTGTGAGTGTGGGTCCAAGATTTGAACATGCTGAATTTCTAACACCGCCACTTTGGGAAGAACAAAAAGAAGAACCACAAGAGATTGAGCTTGCTACTGTTGTGTTAAAGCTCACCAAAGGCCAAGTTGAGATGCTTAAGAAGAAAGCTTATCATGATGGTGGTAAAGATGGCTTTGGCAATGGTTCAAACTCATCAACACTTTCTTCAAGTAGGCCTTACACTAGTTTTGAGGTCATAAGTGGTCACTTATGGAGGTGTATTTGCAAGGTGAAGAATGAGGGTAATTGGGGCCAGAAAACAAGGGTATGTGCATTGGTCAATTGCAGGAACAGATTTAAACCAAATCTTCCTCAAAGTTATTTTGGGAATGCAACATTTCCTACCGTGACACCAACATGTTGCTTCGATGATATTGTTCACAAGCCTCTAGGCTACGCCGTTCGGAACGTGAGGAAAGCGATTGAGCGAATGAATGATGAGTATGTAAGGTCTGCCATTGCTTACATTGCTAATCAGAAGGACATGAATTCATTGAGGGAGAAGTTGTATAATCTTGGAGGAGGAAAATCCAGGGTGAACCCGAATATTTATATTGTGAGTTGGGCTAACTTTCCTTTTTATGAAGCGGATTTCGGGTGGGGAAAGCCGGTTTGTTTGGTTCCGGGAAGCATAAATTCGGATGGGAAGGCTTTCATTATGAACAATGGAAGTGGTGATGGCTTCATTGTTGCTACTTGCTTGCAACAATCCGTTGTTGATGATCTGAAGAAGCTCTTTTATGAGGATATAGAGGAGGTATATCCTAACTCCAAATTGTGA 1410 0.4355 MVVTIDRSYTITPSDSSSTTIIPLSHCDQTKLPNHGSQLSLYTTSNSSSSMENLRASLSKALNLYYPLAGRLRWIHGGRLQLLCNSKGVTLLEATCHDNHTTLDMLLENLDNNVLLEQFLPKVDYSVDRIDDMPLMAAQFTRLPGNGVVLGMIICRAVVDGAALGNFICSWSKLARGEDLDSSLVPFYDRGLLDSLGVSVGPRFEHAEFLTPPLWEEQKEEPQEIELATVVLKLTKGQVEMLKKKAYHDGGKDGFGNGSNSSTLSSSRPYTSFEVISGHLWRCICKVKNEGNWGQKTRVCALVNCRNRFKPNLPQSYFGNATFPTVTPTCCFDDIVHKPLGYAVRNVRKAIERMNDEYVRSAIAYIANQKDMNSLREKLYNLGGGKSRVNPNIYIVSWANFPFYEADFGWGKPVCLVPGSINSDGKAFIMNNGSGDGFIVATCLQQSVVDDLKKLFYEDIEEVYPNSKL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02480 469 Gene3D - 214 458 IPR023213 -
Aip06g02480 469 PANTHER SHIKIMATE O-HYDROXYCINNAMOYLTRANSFERASE-RELATED 8 462 - -
Aip06g02480 469 Gene3D - 1 210 IPR023213 -
Aip06g02480 469 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 8 462 - -
Aip06g02480 469 Pfam Transferase family 2 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02480 Aip-Chr6 110671258 110673712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02480 1 458 Monolignol Biosynthesis Gene Families AT5G48930 31.613 5.69e-68 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02480 K13065 - gmx:100819383 462.611