Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02398 ATGCACCACGTCTTCCCGTCGTCCTCGGTGTCGTCTCCCCCTTCATCGCTACACTTCAAGAGTTTCAATGGAGCGTCAGCCTCAGGTCTATCTATGGAAAATATTTGTCAATTGCACTTTGCTGATCTTGGCTTGGCATTCGAATTTTATAATTCATATGCCAAGACGAGGGGCTTCAGTGTGCGAAAGAGTAGGAGTAGAATAGTTGATGGAAAAGTTAGAGAAAAAACATATGTTTGTTCTTGTGAAGGGTATAGATTAGAAAAATGGAACCATATGAAAAATCGAGTTAGGGAGCCAAAATCAGAGGCAAGATGTGGTTGTATGAGTAAACTTCATGTGATCTTCAATGCGGTAACTGAGAGTTGGGTAGTGAGAGATTTTTGTGATGAACACAACCATGAGCTTGTTGTTCCAAAGTTAGCAAGAATGTTAAGATCTCACAAGAAAATGACTGAGCCCGACATTAGTCAAATGAACCATATGAAAGAGGTGGGGATCAGCATGCCAAACATATTTGGGTCATTAGCTAGCCAGTGTGGTGGGTACGAGAACGTTAATTTTTCAATTAAGGATATGCACAATCAAGTTGCGAAGCAAAGAAGACAATTACCTGATGATTTAACCTCTGCAATGGCTTACCTGGAAACGCTAGCAGCAAGGGATCAAAACTTGTTCTATAGTGTTGAAAAGGGAAGAGAAGGAGTGTTTCGGCAAATTTTTTGGTGTGATGGCCGGTGTCAGTTGGATTACGATCTGTTCGGGGATGTGCTAGCATTTGACGCCACATATAAGAAGAATAGATACAGATTGCCGGTGGTAATATTCTCGGGAGTTAACCACCATAATCAAACCGTTGTATTTGGTGCTGCGATAGTTTCAAATGAGAGGAAAAGCACCTATGTGTGGTCACTAAAACAGCTTCTCATAGCAATGAAGGGAAAGACACTGACTTCAGTAATTACGGATGGTCATCCATCGATGGCTATCgctattcaggaagtgtttccgaatgcacatcataggttatgtgcatggcacttgatgcgtaatGCAACAAGCAATATTCACAAACCTCAGTTTACGAAAATGTTTACAAAGTTAATGCTAGGTGATTACGAAGTTGGTGTGTTCGAACAAAAGTGGGAGGAAATGGTTGGATTCTTTGGAGTGGAAGATCGGGAATGGATAGTAGATATGTATGGGAAAAGAAACATGTGGGCTATCGCTCATATCCGAGAAAAATTCTTTGCTGGGTTTAGAACGACTTCGAGGCGTGAAAGTCTACATGCTGTCCTCAAAAGATATGTTAAATCACGCCATAATTTGACAGAATTTGTTCAACACTTCCAGCGTTGTTTGAGCTACATGCGGCACAGAGAGGATTTGGCAGACTTTAAATCATCAACTGGACAACCTGTGATGCAGACACACTTTCAACAATTAGAAAGGTCAGCAGCTACCATTTATACCCGACAAATTTTTGTGTTGTTCCGTTCAATGCTCCACAAGGCCAGCACATTAAAGGTAACATATGAAGAGGAAACGAGTTCTTGCAAGATTTATCAGGTGTCAAAATTTTACAAGCCTAACATGATATGGCATGTGTCTTTTCACGGAGAGCAAGATGAATTTAAATGCTCATGCATGAGAATGGCCTCGATAGGTATTCCATGTAGTCATATACTTGTTGTTTTGGGTTTTCTAGACATTGCAGAGCTACCAAAATCATTAGTGCTGCGAAGATGGACTAGAAAAGCGAAGGAAGGCATTAGTGGGTATGATGACATGGGCGGCTTGATGGAGGATTCCTTGGCTATCAGTCGGCGTGCATGTTTGGCACATTGGGCTCATAGCGGGGACAATAACATCATGGAGGGGCATGCGGAATACATGTATGAAGACCTTGCAAAGAATGGAAGTACTGAGATAGAGACCATAAGGAAGCCTAAGCATTACAGCTACTGTCGCAGGGGGGGCATAACATTGCTATGTGTTCCATGA 2004 0.4057 MHHVFPSSSVSSPPSSLHFKSFNGASASGLSMENICQLHFADLGLAFEFYNSYAKTRGFSVRKSRSRIVDGKVREKTYVCSCEGYRLEKWNHMKNRVREPKSEARCGCMSKLHVIFNAVTESWVVRDFCDEHNHELVVPKLARMLRSHKKMTEPDISQMNHMKEVGISMPNIFGSLASQCGGYENVNFSIKDMHNQVAKQRRQLPDDLTSAMAYLETLAARDQNLFYSVEKGREGVFRQIFWCDGRCQLDYDLFGDVLAFDATYKKNRYRLPVVIFSGVNHHNQTVVFGAAIVSNERKSTYVWSLKQLLIAMKGKTLTSVITDGHPSMAIAIQEVFPNAHHRLCAWHLMRNATSNIHKPQFTKMFTKLMLGDYEVGVFEQKWEEMVGFFGVEDREWIVDMYGKRNMWAIAHIREKFFAGFRTTSRRESLHAVLKRYVKSRHNLTEFVQHFQRCLSYMRHREDLADFKSSTGQPVMQTHFQQLERSAATIYTRQIFVLFRSMLHKASTLKVTYEEETSSCKIYQVSKFYKPNMIWHVSFHGEQDEFKCSCMRMASIGIPCSHILVVLGFLDIAELPKSLVLRRWTRKAKEGISGYDDMGGLMEDSLAISRRACLAHWAHSGDNNIMEGHAEYMYEDLAKNGSTEIETIRKPKHYSYCRRGGITLLCVP 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02398 667 ProSiteProfiles Zinc finger SWIM-type profile. 534 570 IPR007527 GO:0008270
Aip06g02398 667 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 41 590 IPR031052 GO:0006355
Aip06g02398 667 Pfam MULE transposase domain 257 351 IPR018289 -
Aip06g02398 667 SMART 26again6 545 572 IPR006564 GO:0008270
Aip06g02398 667 PANTHER OS02G0262500 PROTEIN 41 590 - -
Aip06g02398 667 Pfam FAR1 DNA-binding domain 48 137 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02398 Aip-Chr6 108649844 108652554 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip06g02398 MULE 3.5e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02398 - - aip:107647229 1297.72