Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02371 ATGGCTGAAGTGGATCAGAATTTGACTCAAAGGTATGAGGCTGTGTGGCAAATAAGATTGGGTGCTACAGAGGAATTTTATCCCCAAAGACCTGGTGAGGCTGATTGTATCTACTATTTGAGGACTAGATTCTGTGGCTATGGTTCCCACTGCCGTTTCAACCATCTCCGTGACCGGGTCGAGATCCGGTTTCATTGTGTCCGCCCAATGGATCGGTACAGCCGATTGAGCGAGGGTTCCCAGTCTGATCCAGCAAGTGTTGTGGTTATTGAATCAAATGTCTTTTGGCTGTTGGTGCTGTTGCTAGGGCTGGAGGATGGGAGTACCTGGAGCCAATTGGCCAGCCTTTGTGCTAGATCTTGGGATGTCTGA 372 0.4919 MAEVDQNLTQRYEAVWQIRLGATEEFYPQRPGEADCIYYLRTRFCGYGSHCRFNHLRDRVEIRFHCVRPMDRYSRLSEGSQSDPASVVVIESNVFWLLVLLLGLEDGSTWSQLASLCARSWDV 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02371 123 SUPERFAMILY CCCH zinc finger 33 59 IPR036855 GO:0046872
Aip06g02371 123 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 56 IPR000571 GO:0046872
Aip06g02371 123 ProSiteProfiles Zinc finger C3H1-type profile. 30 58 IPR000571 GO:0046872
Aip06g02371 123 PANTHER PROTEIN PHOSPHATASE RELATED 9 61 - -
Aip06g02371 123 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02371 Aip-Chr6 107609790 107611339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02371 25 62 C2H2 Transcription Factor Family AT5G18550 65.789 1.25e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip06g02371 zf-CCCH 8.8e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02371 - - csin:114302989 82.8037