Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02314 ATGGGGAGAGGGAAGATCGTGAGAAGGAGGATCGATAATTCCACGAGCAGGAAAGTGACGTTCTCGAAGCGAAGGAACGGTTTGTTGAAGAAGGCGAAGGAGCTTGCAATTTTGTGCGATGCTGAGGTAAAGAAAATGTGTCCAAATGATCCCGATGCAACAAAGAAATTGAAGGAATGTGAAAAGAAAGTGGAAGCCAGCTCTAGCTACATTCACCCATCCATCGAGAGGCTACTACAGTTTCAAGAAAGAAGTTTACTGGTCTACATCAATTTTTGCCAATTCTTTTTTTCTTATAATTTAATCAACAATGTGGCAAAGAGGTTGCCGCAGGAGATTGATGCAGCGAATCAGCGAAGTAAAACATGA 369 0.4228 MGRGKIVRRRIDNSTSRKVTFSKRRNGLLKKAKELAILCDAEVKKMCPNDPDATKKLKECEKKVEASSSYIHPSIERLLQFQERSLLVYINFCQFFFSYNLINNVAKRLPQEIDAANQRSKT 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02314 122 SUPERFAMILY SRF-like 1 53 IPR036879 GO:0003677|GO:0046983
Aip06g02314 122 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip06g02314 122 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip06g02314 122 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip06g02314 122 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL16 1 44 - -
Aip06g02314 122 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 44 IPR002100 GO:0003677|GO:0046983
Aip06g02314 122 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Aip06g02314 122 ProSiteProfiles MADS-box domain profile. 1 43 IPR002100 GO:0003677|GO:0046983
Aip06g02314 122 SMART madsneu2 1 63 IPR002100 GO:0003677|GO:0046983
Aip06g02314 122 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02314 Aip-Chr6 105327430 105329430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02314 1 43 MADS-box Gene Family AT2G14210 90.698 1.59e-20 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip06g02314 SRF-TF 2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02314 K09264 - ini:109168400 83.9593