Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02289 ATGGGAAGGCCTCCATGCTGTGACAAAGTTGGAATCAAGAAAGGTCCATGGACACCTGAGGAGGATATCATCCTTGTCTCTTACATCCAAGAACATGGTCCTGGAAATTGGAGATCAGTCCCTACTAACACTGGGTTGTCAAGATGCAGCAAAAGTTGTAGGCTAAGGTGGACAAATTATCTAAGGCCAGGAATCAAGAGAGGAAACTTCACTCCCCATGAAGAAGGAATGATTATTCACTTGCAAGCTCTTCTTGGTAACAAATGGGCAGCCATAGCTTCATACCTTCCACAAAGAACAGACAATGACATAAAGAATTATTGGAACACACATCTAAAGAAGAAGCTCAAGAAATTCCAACAACAACAAACATCTTCCATGGATTCTTCTTCTCAGCACCTTCAAGCGTCATCTAAGAGCTTCAGTGACAGAATTTCATCATCAGATAATAAGTCTTCTCAGTGTTCATCAATTACCACATCCTATGCATCAAGCACTGAGAACATTTCAAGGCTTCTAGAAGGTTGGATGAGAACTTCTCCAAAACCATCTTCATCATCTTCTCCATTCATCATCAAAGGAGCAGGAGGAGGAGGACCATCATCAAATCATCATGAGATTGATGAAGAAAACAATAACAACAACAATGATAATAATAAGGAGGTTCTTCTAGTCAAGTCTGTTTCTATGCCTGCTTTGAATCTTGAGCTTCATCATCATCAGAATCATCAAGACTTTGAATCTATTCTTTCCTTTGAGAATCTCAACACTACTACTGCTTCTTGCTGGGACAAATCTACTTGTGATTCTATGCCTAATAATAATCACAAATGTTCTTCAGAACCTGCTGCTGCTACTACTTTTTCTCATCATCATCATCATCATCATGAAATTGAGGAAGAAGAAGAGGACTATGAGGATCAAGAGGAGAGAAAGAATAGTAAGAGTAGTAGGGATAAGAATAATAATGACAATAATAACCCTCCATTGTCATTCCTTGAGAAGTGGCTATTGGATGAGAATGTTGGTCATGGTGAGGAGATCATGGAGTTATCTCCTATCTTCTAA 1068 0.3914 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQQQQTSSMDSSSQHLQASSKSFSDRISSSDNKSSQCSSITTSYASSTENISRLLEGWMRTSPKPSSSSSPFIIKGAGGGGPSSNHHEIDEENNNNNNDNNKEVLLVKSVSMPALNLELHHHQNHQDFESILSFENLNTTTASCWDKSTCDSMPNNNHKCSSEPAAATTFSHHHHHHHEIEEEEEDYEDQEERKNSKSSRDKNNNDNNNPPLSFLEKWLLDENVGHGEEIMELSPIF 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02289 355 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 346 - -
Aip06g02289 355 PANTHER TRANSCRIPTION FACTOR MYB60 1 346 - -
Aip06g02289 355 MobiDBLite consensus disorder prediction 177 218 - -
Aip06g02289 355 Gene3D - 13 66 - -
Aip06g02289 355 MobiDBLite consensus disorder prediction 177 191 - -
Aip06g02289 355 MobiDBLite consensus disorder prediction 118 160 - -
Aip06g02289 355 MobiDBLite consensus disorder prediction 273 331 - -
Aip06g02289 355 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip06g02289 355 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aip06g02289 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Aip06g02289 355 CDD SANT 16 61 IPR001005 -
Aip06g02289 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Aip06g02289 355 SMART sant 66 114 IPR001005 -
Aip06g02289 355 SMART sant 13 63 IPR001005 -
Aip06g02289 355 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip06g02289 355 CDD SANT 69 111 IPR001005 -
Aip06g02289 355 MobiDBLite consensus disorder prediction 119 160 - -
Aip06g02289 355 Gene3D - 68 141 - -
Aip06g02289 355 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip06g02289 355 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip06g02289 355 Coils Coil 291 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02289 Aip-Chr6 104257260 104258853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02289 1 159 MYB Transcription Factor Family AT5G62470 69.231 1.38e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip06g02289 Myb_DNA-binding 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02289 K09422 - gmx:100802204 360.533