Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02247 ATGGGCAAGAAGCGGAAGGTTGCACCCAAATCATCTCAAACCGTTGAGCCCCCGCCCAAGCAGCACCAACCTGAACCTCAACAGGAATACGAAGAGGTTGAGGAAGAGGTAGAAGAAGAGGTCGAAGAAGAGGAGGAGGTAGAGGAAGAAGAGGAAGAGGAGGAGGAGGAAGAAGAAGAACAAGAAGGAGGTAACGAACAAAAGCAACAACAAGAGGACGAAGACGACGAGCCCATACCGAAGCTTCTAGAACCTTTTGGTAAGGACCAGATCTTGAGTCTTCTCTGCGAAGCGGCCGCCAAGCACCGTGACGTGGCCGATCGAATCCGTCGGGTGGCCGACGAGGACGCTGTCCACCGGAAGATCTTCGTCCACGGCCTTGGTTGGGACACCACCGCCGAGACCCTCATCAGTGCGTTCCGCCAGTACGGCGAGATCGAGGACTGCAAGGCCGTCACCGATAAGATCTCCGGCAAGTCCAAGGGCTACGGATTTATCCTCTTCAAGACCCGCCGCGGCGCCCGCAATGCCCTCAAGCAGCCGCAGAAGAAGATCGGTAACCGCATGACAGCGTGCCAGCTGGCATCCATAGGCCCCGTCCAGCAGCCGGCACAGCAGCCTGCTGCCGCGGCCGCCTCGTCAGGGTCGGCAGTCTCCGAATACACGCAGAGAAAGATCTATGTGAGCAACGTTGGGTCCGAATTGGACCCGCAGAAGCTGATGGCGTTCTTCTCGAGGTTCGGTGAGATCGAGGAAGGGCCATTGGGGCTCGACAAGGTCACTGGGAAGCCAAAGGGGTTCTGTTTGTTCGTTTACAAGAGCGTTGAGAGTGCGAAGAGGGCGTTGGAGGAGCCTCACAAGGAATTTGAGGGACACGTGTTGCATTGCCAGAAGGCCATTGATGGACCCAAGCAAGGGAGGATGCAGCTGCAGCACAACGTTCCAAGGACGCAGTTTCAGAGAAACGACAACGCAGGGTTTGGTGCTGGTGTTGGTGGTGGCATTGGTAACAATGTGCAGGGGCATTTGATGGCGCCCGCGGCTGCCGCAGCCACCCCTTTAGGGGTGAACCAAGCAGCTGTGCCGCCGCTGAATCCGGCACTTGGGCAGGCATTGACGGCCCTGCTTACTCAGCAGGGTGCTTCGTTGGGGCTCACCAATTTGTTGGGAGGTTTGGGATCAACTGCAGGGGCTGTTAATTCAGGCGTTCCAGCGGCAGCAGCAGCAGCACACACGATGCAGGGTGGTTACAGTACTCAGCAGAATATAAGCCCTGGTGTTATGAGCGCGTACGGGAGTCAGGTAGGGCTGCAGGCGGCTTATCCGAACCAGCAGGTCGGGCAGGGTGGCAGCTCTGGAAGAGCGCAACCTGGCGTTGGGCAGTATGGTGGTGTTGCTCCTTACATGGGGCACTAG 1416 0.5777 MGKKRKVAPKSSQTVEPPPKQHQPEPQQEYEEVEEEVEEEVEEEEEVEEEEEEEEEEEEEQEGGNEQKQQQEDEDDEPIPKLLEPFGKDQILSLLCEAAAKHRDVADRIRRVADEDAVHRKIFVHGLGWDTTAETLISAFRQYGEIEDCKAVTDKISGKSKGYGFILFKTRRGARNALKQPQKKIGNRMTACQLASIGPVQQPAQQPAAAAASSGSAVSEYTQRKIYVSNVGSELDPQKLMAFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSVESAKRALEEPHKEFEGHVLHCQKAIDGPKQGRMQLQHNVPRTQFQRNDNAGFGAGVGGGIGNNVQGHLMAPAAAAATPLGVNQAAVPPLNPALGQALTALLTQQGASLGLTNLLGGLGSTAGAVNSGVPAAAAAAHTMQGGYSTQQNISPGVMSAYGSQVGLQAAYPNQQVGQGGSSGRAQPGVGQYGGVAPYMGH 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02247 471 MobiDBLite consensus disorder prediction 29 63 - -
Aip06g02247 471 SUPERFAMILY RNA-binding domain, RBD 216 313 IPR035979 GO:0003676
Aip06g02247 471 Gene3D - 19 200 IPR012677 -
Aip06g02247 471 SMART rrm1_1 121 193 IPR000504 GO:0003723
Aip06g02247 471 SMART rrm1_1 225 297 IPR000504 GO:0003723
Aip06g02247 471 MobiDBLite consensus disorder prediction 1 82 - -
Aip06g02247 471 CDD RRM_RBM24_RBM38_like 224 299 - -
Aip06g02247 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 295 IPR000504 GO:0003723
Aip06g02247 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 188 IPR000504 GO:0003723
Aip06g02247 471 PANTHER - 16 471 - -
Aip06g02247 471 Coils Coil 27 74 - -
Aip06g02247 471 PANTHER GEO13361P1-RELATED 16 471 - -
Aip06g02247 471 MobiDBLite consensus disorder prediction 443 463 - -
Aip06g02247 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 307 IPR000504 GO:0003723
Aip06g02247 471 SUPERFAMILY RNA-binding domain, RBD 120 202 IPR035979 GO:0003676
Aip06g02247 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Aip06g02247 471 MobiDBLite consensus disorder prediction 64 82 - -
Aip06g02247 471 Gene3D - 201 314 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02247 Aip-Chr6 101973689 101976760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02247 216 303 C2H2 Transcription Factor Family AT2G19380 32.955 2.65e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02247 K12741 - gmx:100784200 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02247 06 101973689 101976760 Aip06g02247 06 101973689 101976760 ECH