Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02148 ATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCCACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAACTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGATCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAG 531 0.4444 ISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKTLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02148 176 ProSitePatterns Ribosomal protein L2 signature. 118 129 IPR022671 GO:0003735|GO:0005840|GO:0006412
Aip06g02148 176 Gene3D Ribosomal protein L2, domain 3 97 175 IPR014726 -
Aip06g02148 176 MobiDBLite consensus disorder prediction 160 176 - -
Aip06g02148 176 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 6 173 - -
Aip06g02148 176 TIGRFAM rplB_bact: ribosomal protein uL2 33 175 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Aip06g02148 176 SUPERFAMILY Translation proteins SH3-like domain 34 173 IPR008991 -
Aip06g02148 176 SMART Ribosomal_L2_C_2 34 153 IPR022669 GO:0003735|GO:0005840|GO:0006412
Aip06g02148 176 Pfam Ribosomal Proteins L2, C-terminal domain 34 151 IPR022669 GO:0003735|GO:0005840|GO:0006412
Aip06g02148 176 Gene3D - 21 96 IPR014722 -
Aip06g02148 176 MobiDBLite consensus disorder prediction 126 176 - -
Aip06g02148 176 PANTHER RIBOSOMAL PROTEIN L2 6 173 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02148 Aip-Chr6 95711548 95712078 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02148 35 136 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 44.248 1.25e-20 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02148 K02886 - ghi:121227132 340.887