Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02117 ATGTCCGCCGCCGCCGGAGCTTCTAAACTCCATGAGTCGCCGCCGACGGAAGCTTCCGGCATCCCGAACCGGCCGCCGCCGAAGCGTCACCTCGCCTTCGCTTCGACCAAGCCGCCGTTTGCTCCGCTGGACGACTACCGCAGCTTCTCCGGTCCCCACTGTCGGAAAGCCTCCGATCAAGAACAGGAAGCCGTCGTTGTTCGTTCTCCATACATGAAGCGCAAGAGTGGAGGAGTACAGGAGCAAAGTAATAGTCCTGGATATGCTAATACAGTTAATAGTCCTCTCCAAACCCCTGGATCTACAAAAGGAGGGAGAACATATAATAAGTCAAGGGCTTCTAAGGAAGGTAGATCCGTTCCACAAGCACCCATCTTAGAGGCTGGATCCCCATCTCTTACTCCTAGCAGCTGCCGCTATGACAGTTCCTTAGGTCTCTTGACAAAAAAATTTGTCAATTTGCTCAAGCATGCAGAGGGTGGCAATCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGAAGGATATATGACATAACTAACGTTCTGGAAGGAATTGGTCTTATAGAGAAGAAGATCAAGAACAGAATACATTGGAAGGGGATTGATTGTTCTACATCTGGTGGGATAGATGATGATGTCTCTATGCTGAAGGAAGATGTTGAGAAACTTTCCTTGGAGGAGCACCAATTAGATGATCAAATAAGGGAAATGCAAGAAAGGCTGAGGATTTTAAGTGAAGATGAAAACAATAAGAAGATGCTTTTCGTGACTGAAGATGATATCAAGTCCTTACCTGAATTCCAGAATGAAACTCTCATAGCAATTAAAGCTCCACATGGAACCACACTGGAAGTCCCTGAACCTGAGGAAGCTGTTGACTACCCACAGAGGAGATATAGGGTCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTTCCTTATCAGTCAATTTGAGGAGAAATTCGAAGAGATGAGCTTTCCACTTGCTTCAAGTTCAGGGTCCAACGAACATCAAGCAGCAGAACTGCTTCCTGTTGAATGCAATGATAAAGCCCCTGAACCTCCAGCTCAACTCTCATCTAATACCTGCTCTGATCTGAACACTGTACAAGAATTTGCTGGAGGCATGATGAAAATTGTTCCTTCAGCCGCTGATACCGATGCAGATTACTGGCTTCTATCAGATGTTGAAGCTAGCATAACAGACATGTGGAAAACAGATTGTATCCATCTTTTCAAACTTTTCATGTCTTTTCTTTTGTTTGTCTTCCTCTGCCTTTCATCGAAGTAG 1305 0.4536 MSAAAGASKLHESPPTEASGIPNRPPPKRHLAFASTKPPFAPLDDYRSFSGPHCRKASDQEQEAVVVRSPYMKRKSGGVQEQSNSPGYANTVNSPLQTPGSTKGGRTYNKSRASKEGRSVPQAPILEAGSPSLTPSSCRYDSSLGLLTKKFVNLLKHAEGGNLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKIKNRIHWKGIDCSTSGGIDDDVSMLKEDVEKLSLEEHQLDDQIREMQERLRILSEDENNKKMLFVTEDDIKSLPEFQNETLIAIKAPHGTTLEVPEPEEAVDYPQRRYRVILRSTMGPIDVFLISQFEEKFEEMSFPLASSSGSNEHQAAELLPVECNDKAPEPPAQLSSNTCSDLNTVQEFAGGMMKIVPSAADTDADYWLLSDVEASITDMWKTDCIHLFKLFMSFLLFVFLCLSSK 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02117 434 PANTHER TRANSCRIPTION FACTOR E2FB 25 416 - -
Aip06g02117 434 PANTHER TRANSCRIPTION FACTOR E2F 25 416 IPR015633 GO:0000978|GO:0006357
Aip06g02117 434 SMART E2F_TDP_2 139 204 IPR003316 GO:0005667|GO:0006355
Aip06g02117 434 MobiDBLite consensus disorder prediction 1 133 - -
Aip06g02117 434 SUPERFAMILY "Winged helix" DNA-binding domain 139 202 IPR036390 -
Aip06g02117 434 Pfam E2F transcription factor CC-MB domain 220 320 IPR032198 GO:0046983
Aip06g02117 434 Gene3D - 211 321 - -
Aip06g02117 434 Coils Coil 217 251 - -
Aip06g02117 434 Gene3D - 134 206 IPR036388 -
Aip06g02117 434 MobiDBLite consensus disorder prediction 76 108 - -
Aip06g02117 434 CDD E2F_DD 215 321 IPR032198 GO:0046983
Aip06g02117 434 Pfam E2F/DP family winged-helix DNA-binding domain 141 204 IPR003316 GO:0005667|GO:0006355
Aip06g02117 434 SUPERFAMILY E2F-DP heterodimerization region 216 321 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02117 Aip-Chr6 93494122 93499201 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02117 19 412 E2F-DP Transcription Factor Family AT2G36010 58.102 1.80e-148 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Aip06g02117 E2F_CC-MB 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02117 K06620 - gmx:100811762 567.77