Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02113 ATGGCAACTACAACTACTAAAACTGCAGGAGCTAGGGTTTCTGAGGAAGGGATCATTGAAACATTTCATTATGATGATGATGATGATGAAGAGATCGATGCTGCGAAGAATGGAGTTGCGTTGCTTTTAAAAAAGTCTACTGAAGTGCAAATGCTTTCGCATGTTAGATCTTCATTTAGTTCCTGGTGTATAAGAAGGCACTCCAAAGCACTGGTGTTGATCCCCAACCTGTCATTACTGCTGCCAAGACATTTGTGGACACTGCACAACAAACCACCAAGGCGATTGAAGAGGTGTCCACCAAGAGTAATCCCTGTAGCTGTTAGAGGTTTTGGAACAACCTCCCAATCAAGTGCCAAGCTTCTTCCTGGAGCTGATTGTGCTAATGGTCTTGCATCCCCAAGGGATTTCCTTGTTCCTACAGCATGGTATGAAGATAAATTCAATCCTGGGTACACTATAGTGCAGAATTTTGGTGGTGAACTATTTGTTGCAGTCCTGGATTTTTCTCCCTTCAATGTTGTTGCTTGGCATGGTAATTATGTTCCATACAAGGTTGGTTTGCAATGGATGCTTTCTTTGTACAATAACAAGTTGAATAGAATTTTGGCGGATGAGATGGGTCTTGGAAAAACTGTGCAGGTTATGGCATTGATTGCATACTTCATGGAATTTAAAGCAAACTATGGCCCGCTTCTTATAATAGTACCGAATGCTGTTTTAGTTAACTGGAAGAGCAAGTTTTATAATTGGCTACCATCTGTATCGTGCATTTTTTATGTTGGAAGCAAGGATCAACGGTCAAAATTGTTTTCACAACTGATGAGCAAGAAAGTACCAAGAACAAAAGAAGAACTCCTTGAACTCAATGGCATGAGCAAGGCCAAGGTAAGCAATTACGGTGATCAGATACTGGAAACCATTGAAAATACTATTAATGAGTATTACAAGTTGGATAAAAGCATCAATGGCAGTGCTGATTCTGCAAAAAGGAGACGAGATGCAAATGGAGGAGAGCCAAAGAAGAAGAAAACTCGTGGAAAAACAACTTGCAAGGAGATTTATGCAAGGACTATGGAACAGCGGGAAGAAGTTACTTTTGATCTTGGACAGCCCGTAGGACCAACCGACCAAAGTGTTTCTAATTTAACTAGTTTTGTTGGCACTATTGGTAGAAATAAAAGATTCGTTAGTCTTTTGTACACTAGTTGGCATGCTGTTCCTCCTAAAGCTAAGAAGTTCATGTGGGACTATGTTAATACCAAGTTTCTCCTCCCAGACAGTGGAGAAAAGTGGGTAATGCAAGCGATTCGAGATGCTTGGAAGCGGTTCAAAGGAAAGATTAAGCAAAAGCATTTCGTTCCCTATGATACTATTGAAGATATGGTGAAGAATCGACCCTCACAAGTACCAGAAAGTGGTTTCATAAAATTGATCTATTATTGGAGTCATCCTCTAATCCAGTCAATAAGTCAAAGAAACAAGCAACACAAGAAAAATGTGAAGTTTCCACATCGCATGGGGCCAATTAATTTCGGAAGAGTACGAGTGGCTATGCAAGCAACAAAGGAAACAAAGGAGGAACCAAAAAGGTTTGAGATGTTCATTGCTACCCGAACAAGTCGGAAGAGGAAAGAAGTGGATGAGAAAACACAAACTGCTGTTGAAGACTTCCAACACCGCCAAGCTGCTGGTGAAACAGAAGAGGAAGCATTTGAGGCCATATTCGGGAAAGAACAACCAGGTCGGGTAAGGTTGTATAGAAGATCTGTGACAAAGACTGATTTAAAAAAATATGCTGAAATTAATGAAATCAAGAATCAGCACAAAGAGGAAGTATCCAATCTGAAGGATAAACTTAGACACATCGAGGCCCAACAGCAAAAACAAGAGGCCAAACAGCAAAAACAAGACGAAGAGATTCATGGGTTGCGAAATATGATCAAGTTATTACTGCAGCGATCGGAACCTGGAATGAGGCCAGAAGAACTAGAAGCTTTATTACAAGACGCCCAACAGTCTCCTATTGATGCGAATAGCGGCCATGGATCAACACATTTTCCAAACTTAGATGTGGTATGTCCTTATCTATTCCTTGTTCCATAG 2106 0.4065 MATTTTKTAGARVSEEGIIETFHYDDDDDEEIDAAKNGVALLLKKSTEVQMLSHVRSSFSSWCIRRHSKALVLIPNLSLLLPRHLWTLHNKPPRRLKRCPPRVIPVAVRGFGTTSQSSAKLLPGADCANGLASPRDFLVPTAWYEDKFNPGYTIVQNFGGELFVAVLDFSPFNVVAWHGNYVPYKVGLQWMLSLYNNKLNRILADEMGLGKTVQVMALIAYFMEFKANYGPLLIIVPNAVLVNWKSKFYNWLPSVSCIFYVGSKDQRSKLFSQLMSKKVPRTKEELLELNGMSKAKVSNYGDQILETIENTINEYYKLDKSINGSADSAKRRRDANGGEPKKKKTRGKTTCKEIYARTMEQREEVTFDLGQPVGPTDQSVSNLTSFVGTIGRNKRFVSLLYTSWHAVPPKAKKFMWDYVNTKFLLPDSGEKWVMQAIRDAWKRFKGKIKQKHFVPYDTIEDMVKNRPSQVPESGFIKLIYYWSHPLIQSISQRNKQHKKNVKFPHRMGPINFGRVRVAMQATKETKEEPKRFEMFIATRTSRKRKEVDEKTQTAVEDFQHRQAAGETEEEAFEAIFGKEQPGRVRLYRRSVTKTDLKKYAEINEIKNQHKEEVSNLKDKLRHIEAQQQKQEAKQQKQDEEIHGLRNMIKLLLQRSEPGMRPEELEALLQDAQQSPIDANSGHGSTHFPNLDVVCPYLFLVP 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02113 701 MobiDBLite consensus disorder prediction 327 349 - -
Aip06g02113 701 PANTHER OS10G0409366 PROTEIN-RELATED 316 683 - -
Aip06g02113 701 Gene3D - 180 323 IPR038718 -
Aip06g02113 701 Pfam Plant transposase (Ptta/En/Spm family) 477 589 IPR004252 -
Aip06g02113 701 PANTHER TRANSPOSASE, PTTA/EN/SPM, PLANT-RELATED 316 683 - -
Aip06g02113 701 Pfam SNF2-related domain 198 277 IPR000330 GO:0005524|GO:0140658
Aip06g02113 701 SUPERFAMILY RmlC-like cupins 128 191 IPR011051 -
Aip06g02113 701 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 192 273 IPR014001 -
Aip06g02113 701 Pfam Homogentisate 1,2-dioxygenase N-terminal 126 186 IPR046452 -
Aip06g02113 701 Coils Coil 599 642 - -
Aip06g02113 701 Pfam HRDC domain 275 308 IPR002121 GO:0003676
Aip06g02113 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 278 IPR027417 -
Aip06g02113 701 SMART ultradead3 179 462 IPR014001 -
Aip06g02113 701 SUPERFAMILY HRDC-like 275 312 IPR010997 GO:0000166|GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02113 Aip-Chr6 93265648 93273028 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip06g02113 Transposase_24 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02113 - - aip:110268436 696.427