Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02089 ATGACTGATGTAGAGGGTGAGAGAAAATATTTGAAAGATGACAAACTTATTGACATGTTGGTCATTCATATTGAGAATGACGGTTTAAAGCTTAATATTGTTGTTCTTGGAGAGATGGTGGACCGGATCAAGGGTCTTGTGGCATCGGATGAGCAACAACTGCCAGTAGTTATTTTTCAATTTGCAAGAATAAAGAATGTTGGAGGTATTACCAAGCTCTTGATAAATCCAGATGTTCTTGAGGCTATGATGCTTCAAAAAAGTGTGTACTTTAGAGAGATCTCGCAGTACCTGTCTGTAATTTCCGGCAAACCGGCGTATGTTGATGAAGATGAAGTTTTATATTCCACTGAGAGGAAGTCAATAAAGGAGTTATGTGCGGTTGCGGATGTTGGATTCTATGTTATTCTGGCCACTGTTCTTGATGTTGAACCCGTTCCAAGTTGGGGGTATAAATCATGTGTTTGCAGCGTGAAGACAGAAGCTAATGCGGATACATACTTCTGCGATGGCTGTAATAGGGACGTCAATAATGTGGTTGACAGGTATAAATTGAATTTCTTGGTTTTTGATGATACTGCTATAACAAATTTTGTTGTGTTCGATAAGGAGGCTGCAACCCTATTCGGATGGACCTGTACTGAGACAGTGAAAGAGTTGAATAAAAAAGGGGAAGCAAGCAAAGATCCTATTGGTTTTAATGAGTTTTTCCTTGATAAGGAGTTTCTATTCAAGGTCGAAGTAGAAACTACTGGATGGTGCGATTCTTATGATGCATCGGTGATAAGTTCTGATTCTACCATTTTAGTGAGGTGGAGGGACACTCAAGGCCCGATAAAATCTAGTGTATCCCCTGTTAGTCCTGTTAACCCTGTTCAGCCTCGAGGTGAAGATGGATGTTATTTTTGTGATATGTCACTTGATTCAATCATGGAAAATTTGTCTGCTACTAAAAGACCTGTTGTCAGGATAGCAATGGCAGCTAGGTATGATCTCATCAAGTGTATCAATGCTGGTCCAGAGCATAAGGTGTGGAAGCTCAAAGTACGTGTCATTAGACTTTGGATTGTTTCTCACTTTGCAAATTCTGGGATGAAGGCACCTATTGAGATGGTTGTCCTTGATGAAGAGGGGGATACAATTCAATGCTCTATTAAAGGTATATTTGTTCCTATCTTCGAGGGCCTATTCGCTGAGGGCAATATGTACGTTGTCACTAATTTTGCAGTTGCTTTGAATACCATCAAGTTCAAGCCTACTAGACACGAATTTAGAATCCACTTTAAGAGGGACACGATTGTGCGTCCGGTACAAGATTCTTCAGTTCCATTGAACAGATTCAATTTTGTTCCATTCAAAAAAATTCAGGCAGAGTCTAAAGAAGATGGTTATTTAGTTGATGTGATAGGTCAGCTTGCCTCTAAGGATAACTTGGTCGAGTTCACACGGGACGGGAAGCTGTCAAGTTATATCACCATAGAACTTGATGATCTTGAGGGTGGACAGAAATTAAGGGTAACGTTGTGGCAGTCTTTTGCTCTTGACTTGCTCAACTATCTGGAGGAACACCTGTGTCTTACCTATGTGGTTATTCTCCAAATGGGCAAGATGAAATTTTTTATTGGGACGATTAAGGAAGTTGAGACCGAGTTTGGTTGGTGGTATAAAGGATGTAAGAAGTGTCGTCATGGCTTAAGGGAACTTGAGAAAAGATATTTCTGTCCCAATTGCATTGACGACTATGGGTTCTATGTGCCAAGGCTTGTAAGAGTGAGTCAACTCCATCAATTGCAATTAATGAGAAACATAATTCTAAGATTGTTGGAGCTAAGAAACATATGGAAGAGATTTGAGAGGAGTCAGTTTCATCCAAATCTAAGAAAGGAAAGTGGGTTGTGA 1899 0.4002 MTDVEGERKYLKDDKLIDMLVIHIENDGLKLNIVVLGEMVDRIKGLVASDEQQLPVVIFQFARIKNVGGITKLLINPDVLEAMMLQKSVYFREISQYLSVISGKPAYVDEDEVLYSTERKSIKELCAVADVGFYVILATVLDVEPVPSWGYKSCVCSVKTEANADTYFCDGCNRDVNNVVDRYKLNFLVFDDTAITNFVVFDKEAATLFGWTCTETVKELNKKGEASKDPIGFNEFFLDKEFLFKVEVETTGWCDSYDASVISSDSTILVRWRDTQGPIKSSVSPVSPVNPVQPRGEDGCYFCDMSLDSIMENLSATKRPVVRIAMAARYDLIKCINAGPEHKVWKLKVRVIRLWIVSHFANSGMKAPIEMVVLDEEGDTIQCSIKGIFVPIFEGLFAEGNMYVVTNFAVALNTIKFKPTRHEFRIHFKRDTIVRPVQDSSVPLNRFNFVPFKKIQAESKEDGYLVDVIGQLASKDNLVEFTRDGKLSSYITIELDDLEGGQKLRVTLWQSFALDLLNYLEEHLCLTYVVILQMGKMKFFIGTIKEVETEFGWWYKGCKKCRHGLRELEKRYFCPNCIDDYGFYVPRLVRVSQLHQLQLMRNIILRLLELRNIWKRFERSQFHPNLRKESGL 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02089 632 CDD RPA1_DBD_A_like 346 434 - -
Aip06g02089 632 CDD RPA1_DBD_C 120 249 IPR013955 -
Aip06g02089 632 SUPERFAMILY Nucleic acid-binding proteins 117 253 IPR012340 -
Aip06g02089 632 Pfam Domain of unknown function DUF223 370 459 IPR003871 -
Aip06g02089 632 PANTHER REPLICATION FACTOR A 1, RFA1 344 538 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip06g02089 632 SUPERFAMILY Nucleic acid-binding proteins 447 540 IPR012340 -
Aip06g02089 632 SUPERFAMILY Nucleic acid-binding proteins 340 439 IPR012340 -
Aip06g02089 632 Pfam Replication factor-A C terminal domain 137 254 IPR013955 -
Aip06g02089 632 Gene3D - 110 267 IPR012340 -
Aip06g02089 632 Gene3D - 333 440 IPR012340 -
Aip06g02089 632 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 344 538 - -
Aip06g02089 632 Gene3D - 441 552 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02089 Aip-Chr6 91712732 91721374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02089 284 542 Core DNA Replication Machinery Family AT5G61000 25.275 6.23e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02089 - - ahf:112729129 490.345