Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02064 ATGTCATCATCAGAAACACCACTACGGTGGACTCAGCAACAACAAGAAGAAGCAGAAGATAATATCACTGAAGATGAAATGAATAATAATAAGGAGTTGATGTTCGAGAAGGTTCTTACTCCAAGCGACGTTGGGAAGCTCAACCGCATCGTCATCCCAAAGCCCCACGCGGAGGCTCATTTCCCGACCGGCGCTGACGGATACTCGACCGAAGGGAAGGGCCTGCTTCTGAATTTCGAGGACCAATCGGGAAAACAATGGAGGTTCCGTTACTCCTATTGGAGCAGCAGCCAAAGCTATGTTCTCACCAAAGGATGGGGCCGCTACGTTAGGGAAAACCACCTTTCTGCCGGCGACGTCGTTTTGTTCAAGAGGCACCGCCTCCATCCCAATAATTTCTTTGTTAGTTGGAGGCGCCGTGATCCCGGGACCATGCCCCTGGCGGCTAGAGGGAGGAGGAGGAGGAGGAGAAGGGATGAGGGTACCAGTGGTGGTGATGGCAACAGTGAGAGTGTGGTGGTGGGTGATGCTGCTGTTTCTGTTTCTGTGGGGTATCCTACGCACCACCAGCAACATCCCTTCTCATCCTATCATTCCAATGAATATTTTCTTCATGCAGGTCTCGTGCGCTAG 633 0.5166 MSSSETPLRWTQQQQEEAEDNITEDEMNNNKELMFEKVLTPSDVGKLNRIVIPKPHAEAHFPTGADGYSTEGKGLLLNFEDQSGKQWRFRYSYWSSSQSYVLTKGWGRYVRENHLSAGDVVLFKRHRLHPNNFFVSWRRRDPGTMPLAARGRRRRRRRDEGTSGGDGNSESVVVGDAAVSVSVGYPTHHQQHPFSSYHSNEYFLHAGLVR 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02064 210 Pfam B3 DNA binding domain 35 140 IPR003340 GO:0003677
Aip06g02064 210 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 12 151 - -
Aip06g02064 210 ProSiteProfiles B3 DNA-binding domain profile. 35 141 IPR003340 GO:0003677
Aip06g02064 210 SUPERFAMILY DNA-binding pseudobarrel domain 31 139 IPR015300 -
Aip06g02064 210 CDD B3_DNA 34 139 IPR003340 GO:0003677
Aip06g02064 210 Gene3D - 23 145 IPR015300 -
Aip06g02064 210 MobiDBLite consensus disorder prediction 1 22 - -
Aip06g02064 210 MobiDBLite consensus disorder prediction 1 17 - -
Aip06g02064 210 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 151 IPR044800 GO:0003700
Aip06g02064 210 MobiDBLite consensus disorder prediction 145 171 - -
Aip06g02064 210 SMART B3_2 35 141 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02064 Aip-Chr6 89785302 89786872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02064 25 140 RAV Transcription Factor Family AT2G36080 66.379 1.21e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip06g02064 B3 1.5e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02064 - - aip:107647035 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02064 06 89785302 89786872 Aip06g02064 06 89785302 89786872 ECH