Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02063 ATGGCGGCTTTTCGGAGAATGATTAGCTTAGGATCGAACAGAACTTTGACTCCACCCTCTCTTCTCACTTTCCGCAGAGGAATCGCTTTCAAGCTCTTCGTTGGAGGATTGTCTGTGCACACGACGGAGAAAGGATTGACTGATGCTTTCTCTGATTGCGGACAAGTAATTGAAGCTAAAATTATAACAGACAGGGTATCGGAGAGATCTAAAGGGTTTGGGTTCGTCACCTTTGCTTCACGGGATGAGGCTGCGAATGCCATTTCACAGATGAATGGGAAGGCACTAAATGGCCGCGATATCTTTGTTGATTATGCGAAACCAACTTATTCCAAGAACCGAGTAGGTAGCATGTGCAGAACTGAGTATCTTTTAGGATCATGGATGCACACAATTACAACAATTACAAGAATTGCTCAGCAGAACAAAGTAATAGATTCAACCGGTGTAGCCATTCTCTCTTCCTCTCCCTCCGCAGTCTCTCTCGTTCGCTTCAGCCGCCGCCGCAACCCGCTTCATCCGCCGCCGCGCAACAATCTTCCGCCGCTGCGCAACCCGCTTCCCCTGCCGCCGCGCAACACGCTTACCCGCCGCCGCAACCTAATTTTCTATTAG 615 0.4927 MAAFRRMISLGSNRTLTPPSLLTFRRGIAFKLFVGGLSVHTTEKGLTDAFSDCGQVIEAKIITDRVSERSKGFGFVTFASRDEAANAISQMNGKALNGRDIFVDYAKPTYSKNRVGSMCRTEYLLGSWMHTITTITRIAQQNKVIDSTGVAILSSSPSAVSLVRFSRRRNPLHPPPRNNLPPLRNPLPLPPRNTLTRRRNLIFY 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02063 204 Gene3D - 27 124 IPR012677 -
Aip06g02063 204 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Aip06g02063 204 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 101 IPR000504 GO:0003723
Aip06g02063 204 MobiDBLite consensus disorder prediction 167 191 - -
Aip06g02063 204 SUPERFAMILY RNA-binding domain, RBD 30 116 IPR035979 GO:0003676
Aip06g02063 204 PANTHER TRANSFORMER-2-RELATED 1 112 - -
Aip06g02063 204 MobiDBLite consensus disorder prediction 174 189 - -
Aip06g02063 204 SMART rrm1_1 31 104 IPR000504 GO:0003723
Aip06g02063 204 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE 1 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02063 Aip-Chr6 89658722 89660621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02063 29 107 Eukaryotic Initiation Factors Gene Family AT2G23350 32.911 7.39e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02063 - - pvu:PHAVU_001G192800g 157.532
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02063 06 89658722 89660621 Aip06g02063 06 89658722 89660621 ECH