Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02039 ATGCGAATGATGTTGAAGGACTTCTACCAGAGGAAGACACTGGTCTACCAACCGAAGAAGCCGAGGGAGCACAAGTCTAATCTTAAGAATGATGACTCCGAAGACATTGGTGAAGCCAACTTTGTGAAAGCATCCAATTCTGAACTCAAGTCGTCGAAGTCAGGGAAGAGGAATAAATGGAAACCTGAAGAAATTAAGAAGTTGATCAACATGTGTGGAAAACTACACAATAGATTTCAAATTGTGAAGGGAAGGATGGCTTTATGGGAAGAGATATCTCAGAGCTTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAGTGTAAATCGCTTTGGACATCTTTGGTACAGAAATATCAGGAGATCAAGAACGAGAAGGGTAGTGTAGCAAGAATAGTTGGCAATATCTTGAGGACATGGAAAAGATAA 429 0.4172 MRMMLKDFYQRKTLVYQPKKPREHKSNLKNDDSEDIGEANFVKASNSELKSSKSGKRNKWKPEEIKKLINMCGKLHNRFQIVKGRMALWEEISQSLLADGISRSPGQCKSLWTSLVQKYQEIKNEKGSVARIVGNILRTWKR 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02039 142 CDD GT1 58 123 - -
Aip06g02039 142 Gene3D - 60 121 - -
Aip06g02039 142 PANTHER RIBONUCLEASE J 20 128 - -
Aip06g02039 142 Pfam Myb/SANT-like DNA-binding domain 57 127 IPR044822 -
Aip06g02039 142 SMART sant 56 118 IPR001005 -
Aip06g02039 142 MobiDBLite consensus disorder prediction 17 59 - -
Aip06g02039 142 MobiDBLite consensus disorder prediction 17 38 - -
Aip06g02039 142 ProSiteProfiles Myb-like domain profile. 52 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02039 Aip-Chr6 88250605 88251521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02039 59 131 Trihelix Transcription Factor Family AT2G38250 35.616 2.42e-08 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aip06g02039 Myb_DNA-bind_4 5.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02039 - - gmx:100783850 158.688