Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02018 ATGGAGAGGTTGGAACTAAAGGAAGTTCAGAGACTTGAAGGCCACACTGATAGGGTTTGGAGCTTGGCTTGGAACCCCGCCACCGGCCACAACGGTGTCCCACTCCTCTTTGCCTCTTGCAGTGGCGACAAAACTATTCGAATCTGGGAACAGAACCTCTCTTCTGGTGTCTGGTCCACCAAGGCGGTTTTGGATGAGCCGCACACTCGAACCGTTCGGTCGTGTGCTTGGTCACCTTCTGGTAAGCTGCTGGCCACTGCAAGTTTTGATGCCTCTACAGCTATATGGGAGAATGTTGGGGGTGATTACGAGTGTGTCTCCACTTTGGAGGGACATGAACACGAAGTGAAGAGTGTGTCTTGGAATGCATCTGGAAACCTACTTGCAACGTGTAGTAGAGATAAATCTGTTTGGATATGGGAAGTGCTGCCAGGGAATGAATTTGAGTGTGTGTCAGTGTTGCAAGGACATACCCAAGATGTGAAAATGGTGAAATGGCATCCAACAATGGATATCTTATTTTCGTGTAGTTATGATAACACTATTAAGGTTTGGGCAGATGAAGGTGATAGTGACGATTGGCAATGCATTCAAACAATAGGAGAACCGAATAATGGTCATACTTCAACTGTTTGGGCACTCTCTTTCAATGTCAGTGGTGATAAAATGGTTACTTGCAGTGATGATCTTACGCTTAAGATATGGGAATCAGAAAATATAGGGATGCAATCTGGTGATGGATTCAGACATTGGAGACATCTTTGCACTCTTACAGGGTATCATGATCGGACAATTTTCTCTGTTCATTGGTCAAGAGAAGGTATCTTTGCTAGTGGAGCTGCCGATGATGCTATACGTCTTTTTGTGGATGACAATGAAAGTCAAGTGGATGGTCCTCTGTACAAGTTGCTGCTGAAGAAGGAAAAGGCCCATGATATGGACATAAATTCAGTGCAATGGAGCCCTGGGGAGAAGCCGCTATTAGCCTCTGCGAGTGATGATGGGACAATCAAGGTGTGGGAGGTAGTGTCACAGAGGTGA 1041 0.4592 MERLELKEVQRLEGHTDRVWSLAWNPATGHNGVPLLFASCSGDKTIRIWEQNLSSGVWSTKAVLDEPHTRTVRSCAWSPSGKLLATASFDASTAIWENVGGDYECVSTLEGHEHEVKSVSWNASGNLLATCSRDKSVWIWEVLPGNEFECVSVLQGHTQDVKMVKWHPTMDILFSCSYDNTIKVWADEGDSDDWQCIQTIGEPNNGHTSTVWALSFNVSGDKMVTCSDDLTLKIWESENIGMQSGDGFRHWRHLCTLTGYHDRTIFSVHWSREGIFASGAADDAIRLFVDDNESQVDGPLYKLLLKKEKAHDMDINSVQWSPGEKPLLASASDDGTIKVWEVVSQR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02018 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 12 50 - -
Aip06g02018 346 ProSitePatterns Trp-Asp (WD) repeats signature. 128 142 IPR019775 -
Aip06g02018 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 65 97 IPR001680 GO:0005515
Aip06g02018 346 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 4 344 IPR028608 GO:0016226|GO:0097361
Aip06g02018 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 308 346 - -
Aip06g02018 346 CDD WD40 8 341 - -
Aip06g02018 346 PRINTS G protein beta WD-40 repeat signature 37 51 IPR020472 -
Aip06g02018 346 PRINTS G protein beta WD-40 repeat signature 128 142 IPR020472 -
Aip06g02018 346 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
Aip06g02018 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 109 142 - -
Aip06g02018 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 65 97 - -
Aip06g02018 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 142 IPR001680 GO:0005515
Aip06g02018 346 SMART WD40_4 102 141 IPR001680 GO:0005515
Aip06g02018 346 SMART WD40_4 193 236 IPR001680 GO:0005515
Aip06g02018 346 SMART WD40_4 147 186 IPR001680 GO:0005515
Aip06g02018 346 SMART WD40_4 57 97 IPR001680 GO:0005515
Aip06g02018 346 SMART WD40_4 250 289 IPR001680 GO:0005515
Aip06g02018 346 SMART WD40_4 301 341 IPR001680 GO:0005515
Aip06g02018 346 SMART WD40_4 5 50 IPR001680 GO:0005515
Aip06g02018 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 346 IPR001680 GO:0005515
Aip06g02018 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 236 IPR001680 GO:0005515
Aip06g02018 346 PANTHER WD40 PROTEIN CIAO1 4 343 IPR028608 GO:0016226|GO:0097361
Aip06g02018 346 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 4 343 - -
Aip06g02018 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 154 185 IPR001680 GO:0005515
Aip06g02018 346 SUPERFAMILY WD40 repeat-like 4 340 IPR036322 GO:0005515
Aip06g02018 346 Pfam WD domain, G-beta repeat 104 140 IPR001680 GO:0005515
Aip06g02018 346 Pfam WD domain, G-beta repeat 194 235 IPR001680 GO:0005515
Aip06g02018 346 Pfam WD domain, G-beta repeat 8 49 IPR001680 GO:0005515
Aip06g02018 346 Pfam WD domain, G-beta repeat 309 340 IPR001680 GO:0005515
Aip06g02018 346 Pfam WD domain, G-beta repeat 149 185 IPR001680 GO:0005515
Aip06g02018 346 Pfam WD domain, G-beta repeat 68 96 IPR001680 GO:0005515
Aip06g02018 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 154 185 - -
Aip06g02018 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 204 236 - -
Aip06g02018 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 50 IPR001680 GO:0005515
Aip06g02018 346 ProSitePatterns Trp-Asp (WD) repeats signature. 328 342 IPR019775 -
Aip06g02018 346 Gene3D - 35 346 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02018 Aip-Chr6 86908353 86917535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02018 80 346 U-box Gene Family AT2G33340 26.592 1.02e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02018 K24730 - aip:107645668 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02018 06 86908353 86917535 Aip06g02018 06 86908353 86917535 ECH