Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01983 ATGAAGACGTTTCCTCCCTCCGACACCTTTTACTGGTACAAGATTGAAGACGTTTCCTCGTACCGAGGTGGCTTGGAGCTGTGGAACCATCATCATTATCATTTCCAACCGGAACACGACCTCATACCTCAAGCAAGGCCTCTCTTCCACCAAGATCTTTATAGCTCCGCGGATGCTCTAGGAGTGGGTCTAACCACCGTGTCTAACGATCAGTCACCCGCCTTCCTGGTGATGGCATCGGCCGTGGGGAGTGGAGTAGCAAGTGGAGCAGGAAGTGGAGCAGGTGCGATTAGCTGCCAGGACTGCGGGAACCAGGCGAAGAAGGATTGCCCTCACATGCGGTGTAGGACATGA 354 0.5395 MKTFPPSDTFYWYKIEDVSSYRGGLELWNHHHYHFQPEHDLIPQARPLFHQDLYSSADALGVGLTTVSNDQSPAFLVMASAVGSGVASGAGSGAGAISCQDCGNQAKKDCPHMRCRT 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01983 117 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 4 117 - -
Aip06g01983 117 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 4 117 IPR007818 GO:0003700|GO:0006355
Aip06g01983 117 Pfam Domain of unknown function (DUF702) 96 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01983 Aip-Chr6 84148485 84148838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01983 23 117 C2H2 Transcription Factor Family AT3G51060 46.535 4.71e-13 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Aip06g01983 DUF702 8.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01983 - - aip:107640703 194.897