Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01957 ATGGAAATGGAGGATCATCATCATCAACACCAACAGTATGGCGGCATCACTGATCTGAGGCAGCTTGTGAGTAACAACGGACCCCGTTCAACACATTTTCCTACTTCCATACCGCCACAGCCCACGGCGGAGCTCTTCCCGGGCCACCCAAACCTCGCGGCTGCGCATCAGCAGCAGCACTACGAGCTGATGATGTTTGGGCGCCAAGTAGCTGACTTAATGCCTCGCTGTCTCCACGACTTTGCTGACGCCAGCAATAATAACACAAGCAGCATCGGTGTTGCCACTGCCACTACTCCCACCACAACCACAAGCGCTTCAACTCCTCCTCTTAGTGGGTTGGGCGGCGCTGAGGCTGTAGGATGCTTAGGTGGAGACGCATCCACTGGAAGATGGCCTAGACAAGAGACTCTTACTCTTCTTGAGATCAGATCTCGCCTTGACCCCAAATTCAAAGAAGCTAATATTGCATTTTCATTATATATATATATATATATATATTGGCATGGATACCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTTGAGAATCTGTACAAGTATTACAAGAAGACAAAGGAGGGAAAAGCTGGAAGACAAGACGGGAAGCATTACCGATTCTTTCGCCAACTCGAAGCCTTATACGGTGAAAGCAACAGTAACAACAGCAACGCTGCCTCAGCACAAGAAACCAATTTTGGTGGTAGCAACACCCTCCATTACCAAAACAATCCTCATGCTTTCAATTCCCAACATCAGATGAATAACCAAGAAATGCTGCTTCTTGGTTCCCAGAACAGCCTAAGCCTCACCAACTCCACTGAGTTTGAAACCTCTTCTTCGGATGATGATGATCACAATAGCACTGGGGGAGTGAAGGGGAACGATGAGTCCATGGAGAAGAGGAGGAAGAAGAGAGGAGGGAGCAAGAGCTGGAAGGTGAAGATAAAAGACTTCATTGACTTGCAAATGAGGAAGCTTGTGCAGAAGCAAGAAGAGTGGCTTGACAAGCTTATGAAGACGCTGGAACAGAAGGAGAAAGAGAGGGTTCTGAGAGAGGAAGAGTGGAGGAGACAAGAGGCAGCCAGGTTGGAGAGGGAGCACAAGTTTTGGGCCAAAGAGAGAGCATGGATTGAAGCAAGGGATGCTGCTTTAATGGAGGCCTTGCACAAGCTGACAGGAACTGATCAGGTAAAGTCTCATCATCATCATCATGATGGGATAATAACTGGTTCCGCAATGCAAAATAAGGACCATAACGAAGATGATGAAAACTGGCAAGAAT 1285 0.4755 MEMEDHHHQHQQYGGITDLRQLVSNNGPRSTHFPTSIPPQPTAELFPGHPNLAAAHQQQHYELMMFGRQVADLMPRCLHDFADASNNNTSSIGVATATTPTTTTSASTPPLSGLGGAEAVGCLGGDASTGRWPRQETLTLLEIRSRLDPKFKEANIAFSLYIYIYIYWHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGESNSNNSNAASAQETNFGGSNTLHYQNNPHAFNSQHQMNNQEMLLLGSQNSLSLTNSTEFETSSSDDDDHNSTGGVKGNDESMEKRRKKRGGSKSWKVKIKDFIDLQMRKLVQKQEEWLDKLMKTLEQKEKERVLREEEWRRQEAARLEREHKFWAKERAWIEARDAALMEALHKLTGTDQVKSHHHHHDGIITGSAMQNKDHNEDDENWQE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01957 428 PANTHER - 28 424 - -
Aip06g01957 428 Coils Coil 328 355 - -
Aip06g01957 428 Pfam Myb/SANT-like DNA-binding domain 131 214 IPR044822 -
Aip06g01957 428 MobiDBLite consensus disorder prediction 271 309 - -
Aip06g01957 428 MobiDBLite consensus disorder prediction 279 304 - -
Aip06g01957 428 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 28 424 - -
Aip06g01957 428 MobiDBLite consensus disorder prediction 219 249 - -
Aip06g01957 428 Gene3D - 132 191 - -
Aip06g01957 428 MobiDBLite consensus disorder prediction 395 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01957 Aip-Chr6 79213187 79215181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01957 9 399 Trihelix Transcription Factor Family AT5G03680 45.567 3.86e-83 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aip06g01957 Myb_DNA-bind_4 6.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01957 - - aip:110263365 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01957 06 79213187 79215181 Aip06g01957 06 79213187 79215181 ECH
Aip06g01957 06 79213187 79215181 Aip02g03249 02 109288923 109292206 PCT