Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01948 ATGGGAAGGGGAAAGATAGAGATAAAGAGGATAGAAAATACGACGACGAGGCAAGTGACGTTCTCAAAGAGAAGGAACGGACTCCTGAAGAAGACCAATGAGCTCTCTGTCCTCTGTGACGCCCAGATAGGACTCATCGCCTTCTCCAACACTGGTAAGCTCTCTCACTACTCCTCTCACCCCTACAGGATGGATCAAATAATTGAAAATTACCAACGATCTACAGGGACTCACATAATGCACCATGGACATGCCCATGATCAGGAAGATTTATTGACTGAGATGGCAATGCTGAGGCGTCAAAATCTAAGCCTTGAGATGGGGATTCAGCGCTACCTTGGAGAAGGCATAGCTTTTCTCCAATACGAAGAATTGACTAAGCTTGAAGGAGAACTTCAAAGCTCTGTTGCAAGGGTTCGAAAGCGTCAGGAAAAAGATTCTATGCTCATCAAATTTGTTTAG 462 0.4481 MGRGKIEIKRIENTTTRQVTFSKRRNGLLKKTNELSVLCDAQIGLIAFSNTGKLSHYSSHPYRMDQIIENYQRSTGTHIMHHGHAHDQEDLLTEMAMLRRQNLSLEMGIQRYLGEGIAFLQYEELTKLEGELQSSVARVRKRQEKDSMLIKFV 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01948 153 Pfam K-box region 84 145 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip06g01948 153 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip06g01948 153 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Aip06g01948 153 ProSiteProfiles K-box domain profile. 88 153 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip06g01948 153 PANTHER MADS BOX PROTEIN 1 144 - -
Aip06g01948 153 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 144 IPR031050 GO:0005634|GO:0048316
Aip06g01948 153 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aip06g01948 153 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Aip06g01948 153 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Aip06g01948 153 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip06g01948 153 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip06g01948 153 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip06g01948 153 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01948 Aip-Chr6 77902326 77903363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01948 1 143 MADS-box Gene Family AT5G23260 53.147 1.55e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip06g01948 K-box 5.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01948 - - ahf:112758495 299.671