Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01924 ATGCCGATGAAGAATCTCATGGCCGAGAGGTGGCGCAGGAAGATGCTTAATGATAGGTTGTACATGCTTAGGTCTATTGTGCCAAAGATTAGCAAGATGGATAGGACTTCGATACTTGGGGATGCAATCGACTACTTGAGGGAGTTACTGCAGTGGATTAATGATCTTCACAATGAATTGGAGTCAACTCTACCTGGTTCTTTGCTGCAATCTTCCACCACCAGCCTTCAACCTTTGACACCCACGCTGCAAACCCTTCCGTGCCAGGTGAAAGAGGAACTGTATCTTGGTGTCTTGCCAAGCCCCAAAAACCAACTTGCAAAGTCTGGAGAGCTAAGCTCATCAAATGAAGAAGCACTTGATGGAATACTTGGATTTGGAAAAGCTAATTCTTCATTGATTTCACAACTTGCTTCTTCTGGAAAAGTGAAAAACATGTTTGCTCATTGTTTAAATGGAGTAAATGGAGTGTTAATGATGGATTTCCGCTTGTCACTTTCTATTTTGAAAATGGACTCTCCTTGA 525 0.4248 MPMKNLMAERWRRKMLNDRLYMLRSIVPKISKMDRTSILGDAIDYLRELLQWINDLHNELESTLPGSLLQSSTTSLQPLTPTLQTLPCQVKEELYLGVLPSPKNQLAKSGELSSSNEEALDGILGFGKANSSLISQLASSGKVKNMFAHCLNGVNGVLMMDFRLSLSILKMDSP 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01924 174 PANTHER BHLH TRANSCRIPTIONAL FACTOR 1 108 - -
Aip06g01924 174 Pfam Helix-loop-helix DNA-binding domain 7 49 IPR011598 GO:0046983
Aip06g01924 174 Gene3D Acid Proteases 100 160 IPR021109 -
Aip06g01924 174 SUPERFAMILY Acid proteases 118 155 IPR021109 -
Aip06g01924 174 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 108 - -
Aip06g01924 174 SMART finulus 6 55 IPR011598 GO:0046983
Aip06g01924 174 Pfam Xylanase inhibitor N-terminal 113 157 IPR032861 -
Aip06g01924 174 Gene3D - 3 64 IPR036638 GO:0046983
Aip06g01924 174 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 69 IPR036638 GO:0046983
Aip06g01924 174 CDD bHLH_AtAMS_like 4 74 - -
Aip06g01924 174 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01924 Aip-Chr6 73381024 73382128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01924 1 108 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 76.852 1.18e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip06g01924 TAXi_N 4.5e-09 CL0129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01924 - - ahf:112779231 157.147