Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01887 ATGAGACCAAGCTCCAACCTTGGCTACGCATTTCTTCTTCATACCCTTCTTTTCCTTTGTCACCACACTTGTTCTTCACAAAAGACTTGTCCACAGTGTGGCTCTATGCAGGTTCCTTATCCATTAAGCACACAACCGAGTTGTGGCGATCCGTACTACAAGCTACAGTGTGATCAGCAATCTGGAAAGCTCTACTTTGACACACTTAACGAAAGTTCCTATGTAATACTAAAAATCATGTCCTCGATTCAACGCATGGTAGTTCAGCCAGCACCGTGGCTATCTCGCACATCATGTGTCACACAAGACATGCCAGTTAGCAATGGTCTATGGTTGAACCAATCACTTCCTTTCAACATAACTTCTTCAAACACCATTTTCCTCTTCAATTGTTCACCCCGCCTCTTGGTCTCTCCCCTGAACTGCTCTGCCTCCAGCATCTGCCACCAATACTTGGAGAGTTCCGGCCACGTCAGAAAATCACAAGCGCTTGATTGCGCAAGTGGAATCCACCCTTGTTGTACTTTTGTTGCTGGTGGAAACCCTTCAGCTTACAAGATTCGCCTGCACAATTCCGGCTGTAAAGCTTTCAGAAGCATCCTCCATTTGGATGAGGATAAGCCTCCAAATGAATGGGAAGAAGGCCTAGAAATTCAGTGGCTTCCACCACCCGAACCGGTATGCAAAACACAAAAAGATTGCTCCGGAGACTCCAAGTGTTCGCCGGGCAAAAACGGACTTCTTCGCTGTCTTTGTAACAAGGGACACCATTGGGAGCCTTATGCAGCAACATGCTTAAGGCACACCAGAAATTCCAAATTGAAAACCAGCATAGTAATCTCAATTGTTGTTACCATATTTTTCTCTCTAGCTATAGTTCTTGTTGTGATCACAAAATGTTGTAGAATCTATAGCTACATGGAGGAGAATAAGAAGAAGAAGAAGGAAAAAGAAAGAGAGAATGTGTTGAAATCAAGCACTGGTGAGAAGCCTTATAGAATGTTTCATCTGAAAGAAGTGAAGAAGGCAACAAATTGTTTCTCCCAAGACAGGATTCTAGGTAGCGGTGGATTTGGCGAAGTTTATAGAGGTGAACTCCAAGATGGAACAATGGTGGCTGTAAAGAAAGCAAAGGTTGGAAACCTCAAAAGCACACAACAAGTTCTCAACGAAGTTGCGATTCTCTCACAGGTGAATCACAAGAACCTTGTGAGGCTCTTGGGGTGTTGTGTGGAAGAATCTGAGCAGCCATTGATGATCTACGAGTACATCTCAAACGGAACATTGTATGACCATCTTCACGGGAGGTACCAAAGCTTCTTGGATTGGGAAACAAGGCTAAAAGTGGCGCTTCAGACGGCGGAGGCGTTGGCCTATTTGCATTCCGCGGCGCACACACCAATTTACCATAGGGATGTGAAGTCCACTAACATTCTTCTGGACGATGAATTCAATGCCAAGGTATCCGATTTCGGGCTATCGAAGCTGGCTATCCCGGGGCTGAGTCATGTTTCAACTTGTGCTCAAGGAACTGTTGGATACTTGGATCCTGAATACTACAGAAACTATCAGTTAACAGATAAGAGTGATGTTTATAGCTACGGCGTGGTGTTGTTGGAGCTTTTGAGTTCTCAGAAAGTGATTGATTTTAACCGCGATCCGGATTGTGTGAACCTGGCGGTTCATGTGAGCCAGCATGCAAGCAATGGGACACTACTCATGGAGGTTGTGGATCGGAGACTTGTTTGCAAGGGGGAGTTTAGGGGAAGCATAAGAATGTTCTCGGAGCTTGCACTCGATTGCTTGAGGGAGAAAAAAGGTGAAAGGCCTAGCATGAAGGATATTGTTCAGCGCCTAATTTCCATATTTAAGCTTATAGATCAAGAGAGGAATTATAATGTTAATGTTAACGTTTTAGTTGAGAATGAACAATAA 1935 0.4429 MRPSSNLGYAFLLHTLLFLCHHTCSSQKTCPQCGSMQVPYPLSTQPSCGDPYYKLQCDQQSGKLYFDTLNESSYVILKIMSSIQRMVVQPAPWLSRTSCVTQDMPVSNGLWLNQSLPFNITSSNTIFLFNCSPRLLVSPLNCSASSICHQYLESSGHVRKSQALDCASGIHPCCTFVAGGNPSAYKIRLHNSGCKAFRSILHLDEDKPPNEWEEGLEIQWLPPPEPVCKTQKDCSGDSKCSPGKNGLLRCLCNKGHHWEPYAATCLRHTRNSKLKTSIVISIVVTIFFSLAIVLVVITKCCRIYSYMEENKKKKKEKERENVLKSSTGEKPYRMFHLKEVKKATNCFSQDRILGSGGFGEVYRGELQDGTMVAVKKAKVGNLKSTQQVLNEVAILSQVNHKNLVRLLGCCVEESEQPLMIYEYISNGTLYDHLHGRYQSFLDWETRLKVALQTAEALAYLHSAAHTPIYHRDVKSTNILLDDEFNAKVSDFGLSKLAIPGLSHVSTCAQGTVGYLDPEYYRNYQLTDKSDVYSYGVVLLELLSSQKVIDFNRDPDCVNLAVHVSQHASNGTLLMEVVDRRLVCKGEFRGSIRMFSELALDCLREKKGERPSMKDIVQRLISIFKLIDQERNYNVNVNVLVENEQ 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01887 644 Gene3D Phosphorylase Kinase; domain 1 306 423 - -
Aip06g01887 644 SMART serkin_6 347 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g01887 644 Pfam Protein tyrosine and serine/threonine kinase 349 619 IPR001245 GO:0004672|GO:0006468
Aip06g01887 644 ProSitePatterns Protein kinases ATP-binding region signature. 353 376 IPR017441 GO:0005524
Aip06g01887 644 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 632 IPR045274 GO:0007166
Aip06g01887 644 Gene3D Transferase(Phosphotransferase) domain 1 424 641 - -
Aip06g01887 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Aip06g01887 644 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 21 632 - -
Aip06g01887 644 ProSiteProfiles Protein kinase domain profile. 347 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g01887 644 CDD STKc_IRAK 353 622 - -
Aip06g01887 644 SUPERFAMILY Protein kinase-like (PK-like) 328 625 IPR011009 -
Aip06g01887 644 Pfam Wall-associated receptor kinase galacturonan-binding 30 88 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01887 Aip-Chr6 63671247 63673181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01887 9 629 Receptor kinase-like Gene Family AT5G02070 45.921 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Aip06g01887 PK_Tyr_Ser-Thr 9.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01887 - - gmx:100804678 952.199