Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01866 ATGGAGTGGAATGAAAGCACAAGATCCTTTGCTCCTCGTGCTGAGTCTTCACTAAGCTTCTTTCACAACTATAGCAGCAGTAGCAGCAACCCATCATATCCAGGAAGTGAAGTGAAACAAGCAGCATTGGTGGAGACACCACAAGAGTCGCTTCATGCAATGGCGGAAGTAAAGTACGCGGGCCACCGCGAGAAGAAGAAGCGATTAACAAGCAGCCAGATTGACTTATTGGAGAGAAGCTTTCAGGAGGAGATAAAGTTGGACACTGACAGGAAGATGAAGCTTTCCAGGGAGCTTGGCCTCCAGCCTCGCCAAATTGCGGTTTGGTTCCAGAATAGGCGAACAAGGTGGAAGGCCAAGCAGCTTAAGCACTTGTACTTTGCCCTTAAACAAGAATTTGATCACATCTCCAATGAGAAGCACAAGCTTCAAGAAGAGGTAGTTATGATGTTGAAGGCAAGGCTAAGAGAGCAAGCATTTAGAGCACATGTATCTGGTGTTTACACAGACATGTCTGGGGCAGAAACAGTAGAAAGCACGTCAGAGATGTTGCATGGATCCAAGGGAATGATTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATCAGCAGATTGTAGATGGCTACAGCTGCTTTCTTGTGGAGGATCATCGTAACACTGTTCCACTGCCTCGATGGGCCGTTGCACCATATTGTCCCTAA 735 0.4286 MEWNESTRSFAPRAESSLSFFHNYSSSSSNPSYPGSEVKQAALVETPQESLHAMAEVKYAGHREKKKRLTSSQIDLLERSFQEEIKLDTDRKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLKHLYFALKQEFDHISNEKHKLQEEVVMMLKARLREQAFRAHVSGVYTDMSGAETVESTSEMLHGSKGMINNNNNNNNNNNNNNNNNNNNNNQQIVDGYSCFLVEDHRNTVPLPRWAVAPYCP 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01866 244 CDD homeodomain 63 121 IPR001356 GO:0003677
Aip06g01866 244 SMART HOX_1 62 124 IPR001356 GO:0003677
Aip06g01866 244 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Aip06g01866 244 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 236 - -
Aip06g01866 244 Coils Coil 126 146 - -
Aip06g01866 244 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Aip06g01866 244 Pfam Homeodomain 63 118 IPR001356 GO:0003677
Aip06g01866 244 MobiDBLite consensus disorder prediction 186 213 - -
Aip06g01866 244 SUPERFAMILY Homeodomain-like 50 121 IPR009057 -
Aip06g01866 244 Gene3D - 59 125 - -
Aip06g01866 244 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 236 IPR045224 GO:0003700
Aip06g01866 244 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Aip06g01866 244 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01866 Aip-Chr6 59540080 59541508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01866 1 156 Homeobox Transcription Factor Family AT5G03790 46.746 3.82e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Aip06g01866 Homeodomain 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01866 - - ahf:112757138 347.821