Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01853 ATGGCGTATTATGTTATTGCCGTTAGCCATCGCCTCTCATCTCCCTTGCTGCTTCGTTCATCACCTCGCTGCCGCAACAACATTGTTGCTGCGAGCTTCTACATTTTGATTCCGCTTTCTCTTCACGTTTGTGATTACGTCCTTGCTCTCACCGTTGAGAACTTCCTCGAGCACCACCTCCAGACTCTTCTCTTCAAGGCCGGCATGGCCAAGTCAATCCACCATGCCAAGGTCCTGATCCGCCAGCGCCACATTAGAGAAGGTGAATGCAGCAATCAATAA 282 0.5035 MAYYVIAVSHRLSSPLLLRSSPRCRNNIVAASFYILIPLSLHVCDYVLALTVENFLEHHLQTLLFKAGMAKSIHHAKVLIRQRHIREGECSNQ 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01853 93 Pfam S4 domain 60 86 IPR002942 GO:0003723
Aip06g01853 93 CDD S4 60 86 - -
Aip06g01853 93 PANTHER RIBOSOMAL PROTEIN S9, PUTATIVE, EXPRESSED-RELATED 40 89 - -
Aip06g01853 93 PANTHER 30S 40S RIBOSOMAL PROTEIN 40 89 IPR022801 -
Aip06g01853 93 Gene3D - 57 88 IPR036986 GO:0003723
Aip06g01853 93 SUPERFAMILY Alpha-L RNA-binding motif 42 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01853 Aip-Chr6 55746822 55748235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01853 34 88 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 70.909 7.17e-22 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01853 K02997 - egt:105960958 83.1889