Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01832 ATGGAGCAGCAGGTGGAAGAGGAACATGTGGTGCGCAGCAACAAAAATAACAATAATGATCACATGCAAATTATGATGAAGGGCAAGCGCACCAAGCGTCAGAGGCTACCTTCCCCACTTAGGTTAGCTATGGCCATGCCTTCTTCAACCTCTTCAACCTCCTCTTTCGGTTTGGATACCCCAACAACAACCGCAAGAACAGAAGATGAGGATAATAACGACGAAGACATGGCGAATTGCTTGATCCTCTTGGCTCAAGGCGGCGGAGGCCGGGGAACCCGCCATAATAACAAGAAAGAAAGCATATTCAACCTTTACGATTGCAAGACTTGTAACCGAAGCTTCCCTTCCTTCCAAGCTTTGGGAGGACACAGAGCCAGCCACAAGAAGCCCAAGATCTTAACAAACAGTAGTAGTGTTATTACCACACAAGAGAATTACAATAATGACCCTACAAGCACCGCCCTTACCTTGCAAATATCAAACAGCTCCTTGTACTGCCGCAGCATCACCACCACCAAAACAACGACCGTCATGGAAACCACTGCTCCTATTTCCAAAGCAAGTAAGGTTCACGAATGTTCCATTTGCGGTGCCGAATTCACCTCTGGCCAAGCCTTGGGTGGTCATATGAGGAGGCACAGGGGTTTGTTGACCGTTTCTTCCGCCACAGCGGCAACCACAACCACCACCACTACAACTACATCATCATCTATTAGTGGTGCAAATGCTGATCATCAAGAGACCAAGAACAATAATAATAATGTCAACAAGAATATTTTGAAGCTGGATCTCAATCTTCCGGCACCGGAAGATGATCATCACAACAGGGTACCAAAGTTCTCTTTCCAGTCCAAAGAGAAAGTTATTGTGTTCTCTTCTGCAGCTTCTCTCGTAGATTGCCATTATTAG 912 0.4616 MEQQVEEEHVVRSNKNNNNDHMQIMMKGKRTKRQRLPSPLRLAMAMPSSTSSTSSFGLDTPTTTARTEDEDNNDEDMANCLILLAQGGGGRGTRHNNKKESIFNLYDCKTCNRSFPSFQALGGHRASHKKPKILTNSSSVITTQENYNNDPTSTALTLQISNSSLYCRSITTTKTTTVMETTAPISKASKVHECSICGAEFTSGQALGGHMRRHRGLLTVSSATAATTTTTTTTTSSSISGANADHQETKNNNNNVNKNILKLDLNLPAPEDDHHNRVPKFSFQSKEKVIVFSSAASLVDCHY 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01832 303 MobiDBLite consensus disorder prediction 1 72 - -
Aip06g01832 303 Gene3D Classic Zinc Finger 104 214 - -
Aip06g01832 303 MobiDBLite consensus disorder prediction 1 15 - -
Aip06g01832 303 Coils Coil 239 259 - -
Aip06g01832 303 SMART c2h2final6 192 214 IPR013087 -
Aip06g01832 303 SMART c2h2final6 106 128 IPR013087 -
Aip06g01832 303 MobiDBLite consensus disorder prediction 44 63 - -
Aip06g01832 303 PANTHER ZINC FINGER PROTEIN ZAT5 8 303 - -
Aip06g01832 303 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Aip06g01832 303 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 8 303 - -
Aip06g01832 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 192 219 IPR013087 -
Aip06g01832 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Aip06g01832 303 Pfam C2H2-type zinc finger 191 215 - -
Aip06g01832 303 Pfam C2H2-type zinc finger 106 131 - -
Aip06g01832 303 ProSitePatterns Zinc finger C2H2 type domain signature. 194 214 IPR013087 -
Aip06g01832 303 SUPERFAMILY beta-beta-alpha zinc fingers 105 214 IPR036236 -
Aip06g01832 303 MobiDBLite consensus disorder prediction 231 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01832 Aip-Chr6 51970736 51971904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01832 16 303 C2H2 Transcription Factor Family AT5G03510 38.679 9.49e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip06g01832 zf-C2H2_6 2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01832 - - adu:107494043 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01832 06 51970736 51971904 Aip09g02755 09 126803185 126804896 ECH
Aip06g01832 06 51970736 51971904 Aip06g01832 06 51970736 51971904 ECH
Aip06g01832 06 51970736 51971904 Aip08g00577 08 5029550 5030663 ECH
Aip06g01832 06 51970736 51971904 Aip03g00281 03 2737167 2738541 ECH
Aip06g01832 06 51970736 51971904 Aip02g03305 02 109778426 109779307 PCT