Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01792 ATGACCAAGTACGAGCGTGCCCGGATTCTGGGTACCCGTGCTCTCCAAATCAGTATGAATGCTCCTGTTATGGTGGAACTGGAGGGGGAAACTGATTCACTTAAGGATCCTGATGAAGTATTAGTTAAGTATGAGGTTCTTCTGGAAGATGGAAAGGCTGTGGCTAAGTCTGATGGAGTGGAGTTCAATGGATTTGGTGAAAAAGGGAAGCCAACAGATGGTGATGAAGGAGCAGTTCCACAAAATGCAACAGTGCTGATTACTCTCAAGTTAGTCTCTTGGAAGACTGTGTCTGAGGTAACTGATGACAAGAAAGTGGTGAAGAAGATACTCAGTGAAGGGCAAGGATATGAGTGGCTAAATGGGGGGGCTGTTGTGAAAGGTGACTATTAA 393 0.4529 MTKYERARILGTRALQISMNAPVMVELEGETDSLKDPDEVLVKYEVLLEDGKAVAKSDGVEFNGFGEKGKPTDGDEGAVPQNATVLITLKLVSWKTVSEVTDDKKVVKKILSEGQGYEWLNGGAVVKGDY 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01792 130 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 2 16 IPR020708 GO:0003677|GO:0003899|GO:0006351
Aip06g01792 130 SUPERFAMILY RPB6/omega subunit-like 1 35 IPR036161 GO:0003677|GO:0003899|GO:0006351
Aip06g01792 130 Gene3D - 1 36 IPR036161 GO:0003677|GO:0003899|GO:0006351
Aip06g01792 130 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT K 1 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01792 Aip-Chr6 45272401 45281136 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01792 35 127 Calmodulin-binding Proteins AT3G25230 55.645 3.02e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01792 K09571 - aip:110263818 154.836