Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01781 ATGGACAATCCCTTCGACCACCATGTTCCTCCGCCACACGCCACCGTCACCGCAGCTGACTACGGAGTCTCCGATGACGACGAGGACGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGATGACAACGAAGAGGACGAAGATTCATCGCCTAGGGCTTTGCCAGTGGCTCCTTCCACAACTTCTAATCCACAGCCAATTGTTATCACCGTGGAATCGCAGTCTCATAGCAGCTTCGGAGACGACGACGTAAGCAACAAGCGCCGCAAAACGGAAGGCCGAGAGGCGTCGTCTTCGTCTTTGGCAATTGATGGCAGTCAAGGCAGCGAGTGGAACCGCACTGACATTGACGGCCTCTTCTGCCCTATCTGTATGGAAGCTTGGACCAACAGCGGCGACCACCAAATCTGTTGTCTTCCTTGTGGACACATATATGGTATGTCTTGTATAAAAAGATGGCTTCAACAGCGACGAAGTACAGGCAAGTGTCCACAATGCAATATAAAATGCTCATTAAAGGATGTGAGGAAGCTCTATGCATCTCAAGTAGTTACTGTTGATGATGAATCTCAGAAGAAAATTCGGTCGCTTGAAGCCAAATGTGCTGCGCTGGAAAGTAAGGGTGCTGATTGGTGTGCGAAAGAGGCTCTATGGAGGAAAAGAGAAGCTGCATACCGTCTGGAAATTCAGAAGCTTAAAGCGCTGCTACTGGATATGGAGAGAATGCATTTTGAACTCATAGATGGCACTCAGGATTATCAGTGGAGATCTGAAAAGGAGCAAAATTTTAGCTTAAAGTCCCATGTAAAAGCATCTTTTTGCAATTTTGCATTACAGAAAGCATTTAATATGGATGATGCACGAGTATTTGATATGGATGTATCCAATCAAATTTTACTAATTGCACGAAAGCCAAGGGTGATAGGTGGAGCAGACTTTCTAACTAAAATGAGCTTGATACCTCCATTCGATATGGAAGATATCTTATTGCCTTCTACTACAGAGGGTATTAGAGACCTACATATTTCTCCTTCTGATAGAAGCCTAGCCCTCTATGCTTCAACAGGGAAGAAGTTATCAGTGCTCAGTGTGCAGAGCAAGAATACTGTTGTCAACTATGATCTACAGGTTCCTCCTTGGTCGTGTTCTTGGGATCTCAACAGTTCACATTACATGTATGCTGGACTTCAGAATGGTTGTGTCTTGGTGTTTGATATACGACAAACTGCAGGACCCATGAAGTCTTTAGTTGGATTGACTAGCAACCCTGTTCATACTGTTCATTCTCTTCTGCAAACTTCATGTCTTCCTAACTCCATCTTATCTGCATCTGCCGTTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAAGGGCCATTCATGCTTCCTGAAACTGATAACCAAGGAGTTTGTATATCCCTTGCCTATTGCCCTAGCAGTGATGACATTGTTGTTTCATACCGTCCGAAATTTGACATGTCAATGGACATAGAGGGTCAAAGAAGTTTGTTTGCAGCTGTAGATGAAGCAACGTTTGAATTGATCTTGCATGAGCTGCCTTCTTTTAGCGTCAACCAACGATTCAAACTGCCTGCTCAGGCTCGTGATATTAGGTACTCTCGGAGCTGTGGAATTCTTGGCTGTTTGAGTGAGACGACATTGCAACTTTTCTACACCAAAGTCTTGTGA 1704 0.4454 MDNPFDHHVPPPHATVTAADYGVSDDDEDEEEEEEEEEEEEEEEEDDNEEDEDSSPRALPVAPSTTSNPQPIVITVESQSHSSFGDDDVSNKRRKTEGREASSSSLAIDGSQGSEWNRTDIDGLFCPICMEAWTNSGDHQICCLPCGHIYGMSCIKRWLQQRRSTGKCPQCNIKCSLKDVRKLYASQVVTVDDESQKKIRSLEAKCAALESKGADWCAKEALWRKREAAYRLEIQKLKALLLDMERMHFELIDGTQDYQWRSEKEQNFSLKSHVKASFCNFALQKAFNMDDARVFDMDVSNQILLIARKPRVIGGADFLTKMSLIPPFDMEDILLPSTTEGIRDLHISPSDRSLALYASTGKKLSVLSVQSKNTVVNYDLQVPPWSCSWDLNSSHYMYAGLQNGCVLVFDIRQTAGPMKSLVGLTSNPVHTVHSLLQTSCLPNSILSASAVGLCQWNIDSEEGPFMLPETDNQGVCISLAYCPSSDDIVVSYRPKFDMSMDIEGQRSLFAAVDEATFELILHELPSFSVNQRFKLPAQARDIRYSRSCGILGCLSETTLQLFYTKVL 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01781 567 Coils Coil 23 54 - -
Aip06g01781 567 PANTHER RFWD3 PROTEIN 27 503 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Aip06g01781 567 SMART ring_2 126 171 IPR001841 -
Aip06g01781 567 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 501 562 - -
Aip06g01781 567 Pfam Ring finger domain 126 172 IPR001841 -
Aip06g01781 567 MobiDBLite consensus disorder prediction 59 85 - -
Aip06g01781 567 ProSiteProfiles Zinc finger RING-type profile. 126 172 IPR001841 -
Aip06g01781 567 SUPERFAMILY WD40 repeat-like 282 491 IPR036322 GO:0005515
Aip06g01781 567 PANTHER RFWD3 PROTEIN 501 562 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Aip06g01781 567 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 27 503 - -
Aip06g01781 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 233 IPR013083 -
Aip06g01781 567 MobiDBLite consensus disorder prediction 22 53 - -
Aip06g01781 567 Coils Coil 192 212 - -
Aip06g01781 567 Gene3D - 262 501 IPR015943 GO:0005515
Aip06g01781 567 MobiDBLite consensus disorder prediction 1 113 - -
Aip06g01781 567 CDD mRING-C3HGC3_RFWD3 122 172 - -
Aip06g01781 567 MobiDBLite consensus disorder prediction 86 100 - -
Aip06g01781 567 SUPERFAMILY RING/U-box 117 178 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01781 53 184 C3H Transcription Factor Family AT5G48655 27.586 8.63e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01781 K15691 - gmx:100818898 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01781 06 44043932 44048659 Aip06g01781 06 44043932 44048659 ECH