Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01755 ATGGTGGCCGGAGACAGAGCTGCTAGTGCTTCCAAGAGCCACAGCCAGGCCGAGAAGCGGCGCAGTGACCAGATCAATGCACAGCTTACAAGTCTAAGGAAACTAATTCCAAAATTTGATAAGAGTGAAAACCGAAGAGAGAAGAGGAACGCAGATTTGCAGTATTCGAAGAAGAAGAAGAAGAAGAAAAAGAATGAGGCACAAGGCAGAAGCCAGAAGGGGATGCGAAGACGCGGCACGGCAGCAGTGACTCTGGACTCTGGAGACAGGAGGGCGGAGACGTCAGCGAGGAGAGAACCGTGA 303 0.5182 MVAGDRAASASKSHSQAEKRRSDQINAQLTSLRKLIPKFDKSENRREKRNADLQYSKKKKKKKKNEAQGRSQKGMRRRGTAAVTLDSGDRRAETSARREP 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01755 100 MobiDBLite consensus disorder prediction 36 54 - -
Aip06g01755 100 MobiDBLite consensus disorder prediction 1 100 - -
Aip06g01755 100 Pfam Helix-loop-helix DNA-binding domain 12 59 IPR011598 GO:0046983
Aip06g01755 100 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 9 63 IPR011598 GO:0046983
Aip06g01755 100 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 41 IPR036638 GO:0046983
Aip06g01755 100 Gene3D - 4 54 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01755 Aip-Chr6 41565141 41572425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01755 1 41 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 57.143 2.36e-07 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip06g01755 HLH 1.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01755 - - adu:107469423 74.7146