LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip06g01740	ATGATAACAGGAGCAACCAGTGGAATTGGGGCTGAAACTACACGTGTTCTTGCTCTGCGCGGTGTCCACGTAGTTATGGGGATCGGAAACTTGGCTGCTGCTAAAGATGTAAAAGAATCAATTCTTAAAGAGATTCCCTTTGCTAAAGTTGATGCCATGGAGTTGGATCTCAGTTCATTCGAGTCTGTCAAGAAATTTGCATCAGAGTTTAATTCCTCTGGTCTTCCTTTGAACATCCTCATTTACAACAGCTGGCATGCATATGGGCAATCAAAGCTAGCCAACATGTTACATGCTAATGAACTCGCAAGATGTCTCAAGGTGCAAACTTTTCTGCTTCTTGTATACGGTGATGAAGATGGAGCTAACATTACTGCAAATTTTCTTCATCCGGGAGCCATTACCACCAATCTCTTCTGCCATACCAGTGTAGTAAATGCTCAAATGAACATTCATGGAAGAAATCCAGAGATATGCTTGAGTAGGTTGGAGCGCAAGACTGTGAAGAGGAAACGGCTCAAGCGGGTCATGGAATCAGATTCTGCGTTAACAGAGGATTTGATAGCTTATAACATCATTCCCTTAGATGCTGCATCTTCAACAAATGCTATTGTTTCTTTCCCTGAGGTTCAAGCAGCAGTGTTGGCCTTAAGATATTTTTCTTGCTTGCCAGAGTTGCCTAGGGAAGCCTTCACTTCTTCTATCAGGAATGCTGACATGCTTGACTTTTTACAGTATACTTTCCGATTTCAGGTAGCTATGTCAATCTCAAGAGAAGTTGCAATAGCCTCCCGCCTTGGTGTTGAGGCCGCCATTGTTGTTGGAGGTCGGAATTTCTTCTGTGAGGATGCATGGGTAGCTGCAACAGGATTAGAAAGATGTACTACATACCAAATTGGGGAGCTGGTATCAAGAGAAGTCACTCCTATGGACATGACAGCATTGACATTTTGTGAGGAAAATGCTATTCCTGATTAG	978	0.4294	MITGATSGIGAETTRVLALRGVHVVMGIGNLAAAKDVKESILKEIPFAKVDAMELDLSSFESVKKFASEFNSSGLPLNILIYNSWHAYGQSKLANMLHANELARCLKVQTFLLLVYGDEDGANITANFLHPGAITTNLFCHTSVVNAQMNIHGRNPEICLSRLERKTVKRKRLKRVMESDSALTEDLIAYNIIPLDAASSTNAIVSFPEVQAAVLALRYFSCLPELPREAFTSSIRNADMLDFLQYTFRFQVAMSISREVAIASRLGVEAAIVVGGRNFFCEDAWVAATGLERCTTYQIGELVSREVTPMDMTALTFCEENAIPD	325

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip06g01740	325	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	1	144	IPR036291	-
	Aip06g01740	325	PANTHER	NAD(P)-BINDING ROSSMANN-FOLD PROTEIN	82	152	-	-
	Aip06g01740	325	Pfam	short chain dehydrogenase	1	107	IPR002347	-
	Aip06g01740	325	Gene3D	-	1	82	-	-
	Aip06g01740	325	PANTHER	NAD(P)-BINDING ROSSMANN-FOLD PROTEIN	2	83	-	-
	Aip06g01740	325	Gene3D	-	83	182	-	-
	Aip06g01740	325	PANTHER	RETINOL DEHYDROGENASE	2	83	-	-
	Aip06g01740	325	PANTHER	RETINOL DEHYDROGENASE	82	152	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip06g01740	Aip-Chr6	39427818	39435283	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip06g01740	163	251	Cell Wall Biosynthesis	AT3G07160	53.153	5.37e-27	110

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip06g01740	-		-	ghi:107907962	176.792