Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01738 ATGAACAAGGTTGTGAGAAACAACCTTAGGGTTAGGCTTGGAGATGTCGTCTCTGTGCATCAATGTGCTGATGTCAAGTATGGAAAGAGAGTCCACATTCTTCCCGTTGACGACACTGTTGAAGGAGTAACAGGGAATCTCTTTGATGCATACTTAAAACCTTATTTCCTGGAGGCATATCGTCCAGTGAGGAAGGGTGACCTCTTTCTCGTGAGAGGAGGGATGAGAAGTGTGGAGTTCAAGGTTATTGAAACTGACCCATCTGAGTACTGTGTTGTTGCTCCAGACACAGAGATCTTCTGTGAAGGGGAACCCGTTAAAAGGGAAGATGAGAACAGATTAGATGAGGTTGGTTATGATGATGTTGGTGGTGTAAGAAAGCAGATGGCACAGATTCGGGAACTAGTGGAGCTGCCACTGAGGCACCCACAATTGTTCAAGTCTATTGGTGTTAAGCCACCAAAAGGAATTCTGCTGTATGGACCTCCTGGGTCTGGCAAGACTTTAATTGCCCGAGCAGTTGCGAATGAGACTGGTGCTTTCTTTTTCTGCATCAATGGCCCTGAGATCATGTCAAAACTGGCTGGTGAGAGTGAAAGCAATCTAAGAAAGGCATTTGAGGAAGCAGAGAAGAATGCACCTTCAATCATATTCATTGATGAGATAGATTCAATAGCTCCAAAGAGGGAGAAGACTCATGGAGAAGTTGAGAGGAGGATTGTTTCCCAACTCTTGACCCTCATGGATGGCCTTAAATCTCGTGCACATGTAATTGTTATTGGAGCTACAAATCGCCCGAATAGCATTGACCCTGCTCTTAGGAGGTTTGGAAGATTTGATAGGGAGATAGATATTGGTGTTCCAGATGAAGTTGGGCGTCTTGAAGTTCTTCGTATTCACACAAAGAATATGAAGCTTTCCGAAGATGTTGATTTGGAGAAGATTGCTAAGGACACCCATGGATATGTTGGTGCTGATCTTGCTGCTTTGTGTACTGAAGCTGCACTTCAATGCATCAGAGAGAAAATGGATGTGATTGACTTGGAAGATGAATCAATTGATGCTGAGATATTGAACTCAATGGCAGTAACAAATGAGCACTTCTCAACTGCTCTTGGCTCAAGCAATCCTTCTGCTCTCCGTGAAACAGTTGTTGAAGTGCCCAATGTCAGCTGGGAAGATATTGGTGGTCTTGAAAACGTTAAGAGAGAACTCCAAGAGACTGTTCAATATCCAGTGGAACACCCTGAAAAGTTTGAGAAGTTTGGAATGTCACCTTCAAAGGGTGTCCTTTTCTATGGTCCTCCTGGTTGTGGTAAAACGCTTTTGGCAAAGGCAATTGCCAACGAATGTCAGGCAAACTTCATCAGTGTCAAGGGTCCAGAGCTACTCACAATGTGGTTTGGAGAAAGTGAGGCTAATGTGAGGGAAATTTTTGACAAGGCTCGTGGTTCTGCTCCATGTGTCCTATTCTTTGATGAACTTGACTCTATTGCAACTCAGAGAGGTAGCAGTGTTGGGGATGCTGGTGGTGCTGCTGATAGGGTTTTGAATCAACTTCTTACTGAAATGGATGGGATGTCAGCAAAGAAAACTGTCTTCATAATTGGTGCCACCAATCGACCAGACATCATAGACCCTGCTCTTCTACGTCCTGGCCGTCTAGATCAGTTGATTTATATCCCTCTCCCAGATGAGGATTCACGTCATCAGATATTTAAAGCTTGCTTGAGAAAATCCCCCATCTCAAAAGATGTTGACCTTAGAGCTCTTGCGAAGTACACTCAAGGTTTTAGTGGTGCTGATATCACTGAGATTTGCCAGCGTGCATGCAAGTATGCCATAAGAGAAAATATTGAGAAGGACATTGAGAGAGAAAGGAGGAGAAGGGACAACCCAGAGGCAATGGAAGAGGATGTTGAAGACGAAGTGGCAGAAATCAAGGCAGCTCATTTTGAGGAGTCTATGAAGTATGCACGAAGGAGTGTTAGCGATGCCGACATTCGCAAGTACCAGGCATTTGCCCAAACATTGCAGCAGTCAAGAGGTTTTGGAACCGAGTTTCGGTTCGCAGATACTACCTCTGGTGGTACCGCAGCGGCATCCGATCCATTTGCATCTGCTGGGGGAGCTGATGAAGATGATCTTTACAGCGAGAACCTAGCTGGAGGTGACTCAAGATTGAAGAGGCATATATTGCTGCATGACCATCTCCTTGTTGTTCCCTCCTTTCTCATCTCCTCCCAATTTTGCTTTCCTTTTTTCCCATCTTTGTCGGCGTCGCGGGCTGATTCCATTAGTGGCGACGGAAAGCGTTGGATGCGGACGGAGGAGGAAGAAGAGGAATGGTGGATGGTGAAGGAGATCCATGTGAGGATGAGGAGGAAGCAGAGGAGAAGGGACCCACCGCCACCTACTACCACCGTCTTCATAACCCACAGATATGGCTCCGACACCGGTTGGCTCTTCCAGAAGATCTGCATCAACTTTGCCGCCTGGGGCTACGCCGTCTTCGCCGCCGATCTCTTAGGCCATAGCCGCTCTAATAGTGGACGGGCTTGA 2562 0.4621 MNKVVRNNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPSEYCVVAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSEDVDLEKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEILNSMAVTNEHFSTALGSSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPISKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMEEDVEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFADTTSGGTAAASDPFASAGGADEDDLYSENLAGGDSRLKRHILLHDHLLVVPSFLISSQFCFPFFPSLSASRADSISGDGKRWMRTEEEEEEWWMVKEIHVRMRRKQRRRDPPPPTTTVFITHRYGSDTGWLFQKICINFAAWGYAVFAADLLGHSRSNSGRA 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01738 853 ProSitePatterns AAA-protein family signature. 533 551 IPR003960 GO:0005524|GO:0016887
Aip06g01738 853 Gene3D - 380 563 IPR027417 -
Aip06g01738 853 Gene3D - 1 24 - -
Aip06g01738 853 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 1 693 - -
Aip06g01738 853 Pfam ATPase family associated with various cellular activities (AAA) 430 563 IPR003959 GO:0005524|GO:0016887
Aip06g01738 853 Pfam ATPase family associated with various cellular activities (AAA) 157 286 IPR003959 GO:0005524|GO:0016887
Aip06g01738 853 SUPERFAMILY alpha/beta-Hydrolases 801 848 IPR029058 -
Aip06g01738 853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 676 IPR027417 -
Aip06g01738 853 Pfam Cell division protein 48 (CDC48), domain 2 44 107 IPR004201 -
Aip06g01738 853 PANTHER AAA-FAMILY ATPASE 1 693 - -
Aip06g01738 853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 378 IPR027417 -
Aip06g01738 853 Gene3D - 122 286 IPR027417 -
Aip06g01738 853 SMART AAA_5 153 289 IPR003593 -
Aip06g01738 853 SMART AAA_5 426 565 IPR003593 -
Aip06g01738 853 Pfam AAA+ lid domain 585 625 IPR041569 -
Aip06g01738 853 Pfam AAA+ lid domain 309 351 IPR041569 -
Aip06g01738 853 ProSitePatterns AAA-protein family signature. 257 275 IPR003960 GO:0005524|GO:0016887
Aip06g01738 853 SUPERFAMILY Cdc48 domain 2-like 24 116 IPR029067 -
Aip06g01738 853 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 2 679 IPR005938 GO:0016787
Aip06g01738 853 Gene3D - 567 675 - -
Aip06g01738 853 CDD AAA 123 286 - -
Aip06g01738 853 CDD AAA 396 563 - -
Aip06g01738 853 Gene3D - 288 379 - -
Aip06g01738 853 SMART CDC48_2_2 42 108 IPR004201 -
Aip06g01738 853 Gene3D - 25 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01738 Aip-Chr6 39396023 39405274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01738 359 689 Calmodulin-binding Proteins AT3G56690 43.202 1.03e-79 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01738 K13525 - gmx:100791603 1358.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01738 06 39396023 39405274 Aip06g01738 06 39396023 39405274 ECH