Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01716 ATGCATGATCCTTTGCTGTTTGCAGGAGAGGGCTTGGCGAATGGTGCTGCTCGGCGATGGACTGGTTGGAGTGATGCTTGGCTTTGGCTTTGTTGCGACGGCGACCCAGTGACAGCGACCCAGCAACGGCGACCCTGCGACGGCAATTTCCTTGACGGTGGACACTGGACAACACTCTCTGGCTCCCTCAGGCTCTCCTTCTCTCAAGCATGGAGGTCGGAGCCTCGGAGGTGGAACCGTGGAAGAATGGGAGAGAGAAGTTTTTTGTGGGTGAATGGGGTTAGCCGTAAAAGGAGAAGAAGAAAGCTAGGGTTGTGGCTGAGTGGCCCTTTTATACCTAGAGAGAATAGGAAGCTGACAACCGTCTTCCCTGCTGCAGGGAAATGCTGCTGTCAGTCAGCTGAAGTTCACTACCTGACTACCATTATTTACCACAAGGACGAGGTGGTTCGTGATCTGTCTTCTGAAACTAATAATACTCTGGAGAACGGACCTGTTATGCACAACATGATTGCTACAAAAGCTGACGTAGGGCATTCCACGTCAAGGTGTGGCGGCTCTGAACAATGTAAAGATAATACACAAACTGGTGTTCATGTAAAAGATAAAAAAGCTGTTGGAGAACTTGTATGTTTGCAGTGCTTACATGGTAGTGAACTCATTTGCTGCTTTGGAAAAGGATGTCAAAGGAGGTACCATCCCTCTTGTTTGAATCCTCCTCTCAATTACTACCCTGTGGGCTTCTGGAATTGTGCATGGTGTGTTAAAAAAAAGCTAGATCTTGGTGCGTACTCCATTTCTGAAGGGGTGGAGTCCATCTTGGATTCTAGAGAAGGCATTTCGAAAAACAATGTGACGGAAAAGGAGTACTTTGTCAAGTATCTGGGCCTTGCTCATGCTCACAACCGCTGGATTCCAGAAACACAAATGCTTGAAGAGGGGCCAAAAGTTTTGTCAGCATTTAAGAGGAAGCGCCGGGTTATCAAGTGGAAAAAAGAATGGAGTATACCTCACCGCTTGTTGCTAAAAAGAGCAATTGTGTTACCAAAGCAAAATAAAGAACATTTAGATGGGCATGATAACAATTATTCAGTTGGCTGTTTTGAATGGCTTGTAAAGTGGTCTGGTCTTGGATATGATCATATTACATGGGAACTAGATAGTGCTTCCTTTCTAACGTCGTCTGAAGGCATAAAACTCAAAAATGATTATGAAAGTCGTCGTCTTCGAAAGGGGATGGATGGAGACGTTAATGAGGAGAGAAAAGCTTCCTTTGCTGAATTACCTGTACCGCCTTCAGGTAATTCAGTGGCAGTTTCTAGTCAGCATTTGAGTTATGTGAACAAGCTTTGCATGTGTTGGCACAAAGGTCAGAGTGCTGTCATTGTAGATGATAAGATTGACCAGGAGCGGGTTATGAAGGTGATGTCATTTATATTGTCATTGCATTGTAAGGTGACAAGGCCTTTCCTCATTGTCTCAACTTCTGCTGCTCTTGCTGTGTGGGAAAGAGAGTTCTTACATTTGGCTCCATCTGCAAATCTTGTCATTTACAAGGGAAACAAAGATGTACGGAGAAGCATAAGGACCTTGGAGTTTTATAACGATGACAATGGCATCTTATTTCAAATATTATTATCATCGCCTGATATTATTGTTGAGGACTTAAAGGAACTACGATGCATTTCGTGGGAAGCAATAATAGTTGATGAATGCCAGCGACCTAGAATTTTGGAACACCTTGACAATATCAAGATTTTGACAACAAAGTTGAGGCTCCTGGTTGTTAGCGGACAGATCAAGGATGATCGAGCTGATTATGTCAAAATGCTTTCCTTCCTCAACTCTGAAAATCATGTGTTAAATACTACTGAAACAGAGCCATTAGTCTCTGATAGCATTTCCAATTTGAAAAGCAAATTGGATCAATATGTGGCATTTAGAACAAAAACAGGGTCCACTAGGTTTGCAGAGTTTTGGGTTCCTGCCAAGCTTTCGAGTTTGCAACTTGAGCAGTATTGTTCATTGCTGCTTTCTGACAGAACTCTGCTATGCTCAGCCCAAAAGTCTGACAAGGTCAATGCCCTCCGCAGCCTGCTTAACTCAACAAGGAAGTGCTGCAACCATCCCTTTCTCTTGGACTCGTCGCTATATAATTCCATCAATAAAGATATTTTGGATGATGTACTCTGTCGGAGATTTGGTGAACATTGTTATGTACGATATGCTGCTGGGTATGCGCCCAAAGTGAAGCAAAGTGCTCTAGACAAATTTAATGACGGCGAAAGAGCATTTGTCTTCTTGTTGGAAAGTCGTGCTTGCCTCCCTAGTGTTAAGCTTTCCTCTGTTGATACCATTATATTGTTTGACAGTGACTGGGACCCAGAAAATGATTTAAGAGTCTTACAACGGATGCCTATAAGCTCACAGTACGAACAGTTAACAGTGTTTAGACTATACTCATCTTTTACTGTTGAAGAAAAGGTTCTAATGCTTGCAAAAGAGGGTAGTAGTATCCAGTTGCTTAACCATAGTACCTCTCATGCCGTGCTCCGATGGGGTGCCACCAATCTTTTCAGTAAGCTTGATGACTTACATGGCAGCAACACTCCAGTCGTTGCTCAAGACATTGCCTCTGATCAGTCACTTCTACATGATGTAATCTGTGAGTTATCAACCGTATTTTCTGGTGGAAGCGGTGACATTGATCATCATGAATTGTCCTTCATAGCGAGAGAAATGGATGATGGTTTTGATGTTTTTTCTTGGAGTAATCTCCTTCAGGGAAGGAGTCCTAGATGGAAATTGTTGTCTGTTCCATCTCAAAGGATCAGAAAACCTGTCAATCACTTTGATCACAAAGCAAAGGAATCTGAAAGTGAAAATAATGCTGATAATAGAAAGAAGAGGAAAGTGTCTGAGGGTAACGATCCCAAAAGCAAGGAAGTGTCCAAGGATACTACATTCACAAGGAAGGGGAAAGTGCCAGATCATGTCAATTCCAAATATTTGAAAAAAAGTTTGAAGAACAAGAAGCTAAACACTAGTAATGTAGATGAGTTCTTGCCAAAGCCAGATTTAGCAGGTCTTTGTGATGTTCTACAACTTCCAAAAAATGTCAAGGCTCTTGGTGCAAGGCTTCTTGAGCACATACTGGAATATTTCAACGTTAATTGGCGAGACGTTTCTACCATGCAGGCATTTGAATTATCTGTGTGTTGGCTTGCGGCTTCGTTATTGAAGCACAATTTTGATAAGCAAGGTTCACTTGCACTTGCAAAAGTGCACTTGAACTTCAATTGCGAGGAAGAGGAAGTAACCTATGTTTACTCTAAACTGCTGAAATTTAAGAAGGAATTTTCAAGTTGTTTACAAAGTGGAATTTGTGTTGAGAAATGTACATCAGACTGCGAAACACCTGGGTTGACAGATTTGGTGGAGGATATGCAAAATGGTTTTCACGGTCCTCTAGAATCCGACACATATAGACATGATCTTCAAAGGGAATCTCCCACAACTGTGCTAGCTACTCATTACCAGACTTGTGCAGAAAATTTAAAAATCAGACTTACAGATATTGGAAGTTGTCCTCAAAAGTCATCTGGCACTTTCCCTGCCAAAGCATATGCTATCCCCGTGACATCCAAAGCTGCTTTCTTGGAGCATCAGAGTGAGGTCTTCGATTCAAGTGATGATCCTTGTAATGTCAATCCTGCCACTGGTTCTTTGGAAAATCAAATTAATGGCGATGATTCTGAAGTTTCTCTAATAAATAATAATGAAGTGGTTGAGACAATCACTTGCAGTACTGCTGATGTTCCTGAGGTCAACCAGCATTACAGTGAAGTGAGTGCTGTCCATGGTGAGTCTATTATGGATTTTCCTGAGACTACTTTCCCATATATGGAACCATCAAATACAGATCTACTGCCACTGCCTCAGGAGGATGTTACATCTTTTTTGGAGAATATTTCAATTGGTGAAGTCTTGCCTTTTGATGAAATATTTTATGAAAATTATAACCTTCATGAGGCTGAACCAACATTACAAGTTCCAGATGACCCACCTGAATCAGTCCCAGACCCATTGCAAATTGAAATGGAGAGAATAAAAAAGGCGACTGAAGAAGCTAACAGGATACGCCAGCAGAAATTACACCAGCTTGAGTCAGACCATGGTATGGAGGTTAAAGAATTGGTTGCAAAGTATCAAATGTTGCTTCAGAGTATCAGTACTGAAGTAGCATTGCAAAAAAAGGAACTTGACGCATATTATAAAACAGTTCAAAAGAATAAGTTGTTGGCTTCTGTTTTGGACCACAATCACAAGGAATATAAAAGAGAAGCAGTTCTATTCGCAGAACAAGGCTTACCCTCTGCAATGGGAACACCTAGCTCCTCAAGTACTCAACAAAGAGAGCACCATCCCCCTCTTATGCCTGATCAAAGACTCGAACAGTGTCTACCGATGATTCCCCCACACTTGTTTACTCCAACGGAAGCGGTTAATGCTCTGGAGATTGCTAAGACTTCAACAGCCATTCCAGAAATGAGCCCAGTTAGAGAATGTATTGATCCCATGATTCAGTCCTATGTAAACTTGAATTACGGCTGTTATTCAGTGGCCTCAAACCCCCCTCTTGAAGCCTCTAATTCAGTGCCTATCATGCCAAGTCTAACTAGTGGAATACCAGAACAGCAATTGCCACTACATTTACCTCAATGGCAATATCAGTAA 4737 0.4201 MHDPLLFAGEGLANGAARRWTGWSDAWLWLCCDGDPVTATQQRRPCDGNFLDGGHWTTLSGSLRLSFSQAWRSEPRRWNRGRMGERSFLWVNGVSRKRRRRKLGLWLSGPFIPRENRKLTTVFPAAGKCCCQSAEVHYLTTIIYHKDEVVRDLSSETNNTLENGPVMHNMIATKADVGHSTSRCGGSEQCKDNTQTGVHVKDKKAVGELVCLQCLHGSELICCFGKGCQRRYHPSCLNPPLNYYPVGFWNCAWCVKKKLDLGAYSISEGVESILDSREGISKNNVTEKEYFVKYLGLAHAHNRWIPETQMLEEGPKVLSAFKRKRRVIKWKKEWSIPHRLLLKRAIVLPKQNKEHLDGHDNNYSVGCFEWLVKWSGLGYDHITWELDSASFLTSSEGIKLKNDYESRRLRKGMDGDVNEERKASFAELPVPPSGNSVAVSSQHLSYVNKLCMCWHKGQSAVIVDDKIDQERVMKVMSFILSLHCKVTRPFLIVSTSAALAVWEREFLHLAPSANLVIYKGNKDVRRSIRTLEFYNDDNGILFQILLSSPDIIVEDLKELRCISWEAIIVDECQRPRILEHLDNIKILTTKLRLLVVSGQIKDDRADYVKMLSFLNSENHVLNTTETEPLVSDSISNLKSKLDQYVAFRTKTGSTRFAEFWVPAKLSSLQLEQYCSLLLSDRTLLCSAQKSDKVNALRSLLNSTRKCCNHPFLLDSSLYNSINKDILDDVLCRRFGEHCYVRYAAGYAPKVKQSALDKFNDGERAFVFLLESRACLPSVKLSSVDTIILFDSDWDPENDLRVLQRMPISSQYEQLTVFRLYSSFTVEEKVLMLAKEGSSIQLLNHSTSHAVLRWGATNLFSKLDDLHGSNTPVVAQDIASDQSLLHDVICELSTVFSGGSGDIDHHELSFIAREMDDGFDVFSWSNLLQGRSPRWKLLSVPSQRIRKPVNHFDHKAKESESENNADNRKKRKVSEGNDPKSKEVSKDTTFTRKGKVPDHVNSKYLKKSLKNKKLNTSNVDEFLPKPDLAGLCDVLQLPKNVKALGARLLEHILEYFNVNWRDVSTMQAFELSVCWLAASLLKHNFDKQGSLALAKVHLNFNCEEEEVTYVYSKLLKFKKEFSSCLQSGICVEKCTSDCETPGLTDLVEDMQNGFHGPLESDTYRHDLQRESPTTVLATHYQTCAENLKIRLTDIGSCPQKSSGTFPAKAYAIPVTSKAAFLEHQSEVFDSSDDPCNVNPATGSLENQINGDDSEVSLINNNEVVETITCSTADVPEVNQHYSEVSAVHGESIMDFPETTFPYMEPSNTDLLPLPQEDVTSFLENISIGEVLPFDEIFYENYNLHEAEPTLQVPDDPPESVPDPLQIEMERIKKATEEANRIRQQKLHQLESDHGMEVKELVAKYQMLLQSISTEVALQKKELDAYYKTVQKNKLLASVLDHNHKEYKREAVLFAEQGLPSAMGTPSSSSTQQREHHPPLMPDQRLEQCLPMIPPHLFTPTEAVNALEIAKTSTAIPEMSPVRECIDPMIQSYVNLNYGCYSVASNPPLEASNSVPIMPSLTSGIPEQQLPLHLPQWQYQ 1578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01716 1578 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 169 721 - -
Aip06g01716 1578 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1358 1548 - -
Aip06g01716 1578 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 724 1123 - -
Aip06g01716 1578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 658 836 IPR027417 -
Aip06g01716 1578 Gene3D - 346 399 - -
Aip06g01716 1578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 616 IPR027417 -
Aip06g01716 1578 ProSiteProfiles Chromo and chromo shadow domain profile. 268 333 IPR000953 -
Aip06g01716 1578 Pfam SNF2-related domain 473 712 IPR000330 GO:0005524|GO:0140658
Aip06g01716 1578 ProSitePatterns Zinc finger PHD-type signature. 211 254 IPR019786 -
Aip06g01716 1578 CDD CD_CSD 270 323 - -
Aip06g01716 1578 Coils Coil 1363 1383 - -
Aip06g01716 1578 Gene3D - 441 655 IPR038718 -
Aip06g01716 1578 Gene3D - 1360 1440 - -
Aip06g01716 1578 MobiDBLite consensus disorder prediction 1459 1475 - -
Aip06g01716 1578 SUPERFAMILY Chromo domain-like 227 329 IPR016197 -
Aip06g01716 1578 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 169 721 - -
Aip06g01716 1578 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 724 1123 - -
Aip06g01716 1578 Gene3D - 269 329 - -
Aip06g01716 1578 MobiDBLite consensus disorder prediction 1458 1480 - -
Aip06g01716 1578 SMART chromo_7 333 406 IPR000953 -
Aip06g01716 1578 SMART chromo_7 267 326 IPR000953 -
Aip06g01716 1578 Gene3D - 724 836 IPR027417 -
Aip06g01716 1578 Gene3D - 656 718 IPR027417 -
Aip06g01716 1578 ProSiteProfiles Zinc finger PHD-type profile. 208 257 IPR019787 -
Aip06g01716 1578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 261 IPR013083 -
Aip06g01716 1578 MobiDBLite consensus disorder prediction 947 995 - -
Aip06g01716 1578 ProSiteProfiles Chromo and chromo shadow domain profile. 340 385 IPR000953 -
Aip06g01716 1578 SUPERFAMILY Chromo domain-like 366 389 IPR016197 -
Aip06g01716 1578 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 1358 1548 - -
Aip06g01716 1578 SMART PHD_3 210 255 IPR001965 -
Aip06g01716 1578 Pfam Chromo (CHRromatin Organisation MOdifier) domain 270 324 IPR023780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01716 Aip-Chr6 36948395 36969470 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip06g01716 SNF2_N 3.3e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01716 - - gmx:100813574 1093.18