Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01682 ATGGACAAGGATACTAGTTTGGAAATCCATCTCCCTCCTGGATTTAGATTCCACCCTTCTGATGAAGAGTTAATTGTTCACTATCTAAGAAACAAAGTCACTTCTTCACCACTTCCTGCCTCATTCATAGCAGAGATAGACCTCTACAAGTTCAATCCATGGGAGCTTCCAACAAAAACCTCTTTTTTTACTGTAACTTTGCGTGAAGGGAAGTACCCAAATGGAGTGAGACCAAACAGAGCAGCTGGTGCAGGTTACTGGAAGGCCACTGGAACTGACAAACCAATTATCACGTCATGTGGTATGAAGAGCATTGGAGTGAAGAAAGCCCTTGTCTTCTACAAGGGACGTCCCCCAAAGGGATCCAAAACTGATTGGATCATGCATGAGTATAGGTTGCATGATTCACTCCTCTCAAATTCTCACAAAAGAGGCTCCATGAGACTTGATGAGTGGGTGCTATGCCGGGTGAGACAGAAAACAGGCAGCCCAAGAAGCACTTTAGAAGATCCAAGTGAACTACTTTATGAACCAACAAAAAAGATTCAACAAATGAATGATGAGAACTTCAATCCTGAACTAGTAAAAGCCTCCATTGTGCACAACGAATTTCCAATGTTACCTTATATTCTGGCTTCTAGGAGTACTTTGCCTAATTCCATTGGTGTGTCCTCAAGCACAGGCTTTGTTAGAAATTATGATATGAAAGAATATGGTTCAGTGCATGAAGACAACAACTTGAATGTAATAGGAGCACAGTTCTTAGCATCTGCAATGGAGGGCTTGTATAATAATCCTTTGAAGAGAAAATTCATTGAAGAAGAAGAAAACCATTTGGAATATGCTCCCCCAAATAAGAAAATAAGCCTAGAACTTGGTGATGATGTTGATAATAGTGATGATAAGCCAAGTCTTGTGATGGATACAAACAAAGGCTACAATTTTGGCTTCTTTGATCAGTGGAATTCAATCATACAACCTCAAGAGCTTAACAGCTTAGCCTTCATGGGATATTCATGA 1020 0.4029 MDKDTSLEIHLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFIAEIDLYKFNPWELPTKTSFFTVTLREGKYPNGVRPNRAAGAGYWKATGTDKPIITSCGMKSIGVKKALVFYKGRPPKGSKTDWIMHEYRLHDSLLSNSHKRGSMRLDEWVLCRVRQKTGSPRSTLEDPSELLYEPTKKIQQMNDENFNPELVKASIVHNEFPMLPYILASRSTLPNSIGVSSSTGFVRNYDMKEYGSVHEDNNLNVIGAQFLASAMEGLYNNPLKRKFIEEEENHLEYAPPNKKISLELGDDVDNSDDKPSLVMDTNKGYNFGFFDQWNSIIQPQELNSLAFMGYS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01682 339 ProSiteProfiles NAC domain profile. 11 160 IPR003441 GO:0003677|GO:0006355
Aip06g01682 339 SUPERFAMILY NAC domain 9 160 IPR036093 GO:0003677|GO:0006355
Aip06g01682 339 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Aip06g01682 339 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 2 293 - -
Aip06g01682 339 Pfam No apical meristem (NAM) protein 12 133 IPR003441 GO:0003677|GO:0006355
Aip06g01682 339 PANTHER NAC TRANSCRIPTION FACTOR 56 2 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01682 Aip-Chr6 34368419 34371909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01682 11 165 NAC Transcription Factor Family AT1G69490 66.250 5.05e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip06g01682 NAM 2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01682 - - gmx:100788799 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01682 06 34368419 34371909 Aip06g01682 06 34368419 34371909 ECH