Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip06g01677 | ATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATTACCTTGGAGGTGGAGTCCTCCGATACCATTGACAATGTGAAGGCTAAGATCCAAGACAAGGAAGGCATCCCGCCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGTCGCACCCTTGCCGACTATAATATCCAGAAGGAGTCCACGCTCCACCTCGTCCTCCGCCTCCGCGGCGGCATGCAGATTTTCGTCAAAACCCTAACCGGAAAGACGATCACTCTGGAGGTTGAATCCTCCGACACAATCGACAACGTGAAGGCCAAGATTCAAGACAAAGAAGGCATTCCTCCCGATCAGCAGCGACTCATCTTCGCAGGGAAACAGCTAGAGGATGGTCGCACCCTCGCCGATTACAACATTCAAAAGGAGTCCACGCTCCACCTTGTTCTCCGTCTTCGCGGCGGCATGCAGATCTTTGTGAAAACCCTAACGGGAAAGACCATAACTCTCGAGGTTGAATCTTCGGACACAATAGACAACGTGAAGGCCAAGATTCAAGATAAAGAAGGAATCCCTCCTGATCAACAGCGACTCATCTTCGCTGGGAAGCAATTAGAGGACGGGAGGACGCTTGCTGATTACAACATACAGAAGGAGTCGACGTTGCATCTTGTTCTTAGGTTGCGTGGAGGGATGCAGATTTTCGTGAAGACTCTAACCGGGAAGACGATAACGTTAGAGGTGGAGAGTTCTGATACTATTGATAACGTGAAGGCAAAGATACAGGACAAAGAGGGGATTCCACCGGACCAGCAGCGTCTAATCTTTGCTGGGAAGCAGCTTGAGGACGGACGCACTCTGGCCGATTACAACATTCAAAAGGAGTCCACCCTCCATCTTGTTCTCAGGCTCCGTGGCGGTGAACTCTGA | 921 | 0.5136 | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEL | 306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip06g01677 | 306 | SUPERFAMILY | Ubiquitin-like | 76 | 152 | IPR029071 | - | |
| Aip06g01677 | 306 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 76 | IPR000626 | GO:0005515 | |
| Aip06g01677 | 306 | Gene3D | - | 230 | 306 | - | - | |
| Aip06g01677 | 306 | Gene3D | - | 153 | 229 | - | - | |
| Aip06g01677 | 306 | Gene3D | - | 1 | 76 | - | - | |
| Aip06g01677 | 306 | Gene3D | - | 77 | 152 | - | - | |
| Aip06g01677 | 306 | ProSitePatterns | Ubiquitin domain signature. | 255 | 280 | IPR019954 | - | |
| Aip06g01677 | 306 | SUPERFAMILY | Ubiquitin-like | 1 | 76 | IPR029071 | - | |
| Aip06g01677 | 306 | ProSitePatterns | Ubiquitin domain signature. | 103 | 128 | IPR019954 | - | |
| Aip06g01677 | 306 | ProSitePatterns | Ubiquitin domain signature. | 179 | 204 | IPR019954 | - | |
| Aip06g01677 | 306 | PANTHER | UBIQUITIN | 74 | 283 | - | - | |
| Aip06g01677 | 306 | PANTHER | UBIQUITIN | 1 | 207 | - | - | |
| Aip06g01677 | 306 | PANTHER | UBIQUITIN | 209 | 304 | - | - | |
| Aip06g01677 | 306 | CDD | Ubl_ubiquitin | 77 | 152 | - | - | |
| Aip06g01677 | 306 | PANTHER | UBIQUITIN 13 | 74 | 283 | - | - | |
| Aip06g01677 | 306 | PANTHER | UBIQUITIN 13 | 209 | 304 | - | - | |
| Aip06g01677 | 306 | PANTHER | UBIQUITIN 13 | 1 | 207 | - | - | |
| Aip06g01677 | 306 | SMART | ubq_7 | 1 | 72 | IPR000626 | GO:0005515 | |
| Aip06g01677 | 306 | SMART | ubq_7 | 77 | 148 | IPR000626 | GO:0005515 | |
| Aip06g01677 | 306 | SMART | ubq_7 | 153 | 224 | IPR000626 | GO:0005515 | |
| Aip06g01677 | 306 | SMART | ubq_7 | 229 | 300 | IPR000626 | GO:0005515 | |
| Aip06g01677 | 306 | ProSitePatterns | Ubiquitin domain signature. | 27 | 52 | IPR019954 | - | |
| Aip06g01677 | 306 | PRINTS | Ubiquitin signature | 11 | 31 | IPR019956 | - | |
| Aip06g01677 | 306 | PRINTS | Ubiquitin signature | 32 | 52 | IPR019956 | - | |
| Aip06g01677 | 306 | PRINTS | Ubiquitin signature | 53 | 74 | IPR019956 | - | |
| Aip06g01677 | 306 | CDD | Ubl_ubiquitin | 1 | 76 | - | - | |
| Aip06g01677 | 306 | CDD | Ubl_ubiquitin | 153 | 228 | - | - | |
| Aip06g01677 | 306 | ProSiteProfiles | Ubiquitin domain profile. | 153 | 228 | IPR000626 | GO:0005515 | |
| Aip06g01677 | 306 | CDD | Ubl_ubiquitin | 229 | 304 | - | - | |
| Aip06g01677 | 306 | ProSiteProfiles | Ubiquitin domain profile. | 77 | 152 | IPR000626 | GO:0005515 | |
| Aip06g01677 | 306 | SUPERFAMILY | Ubiquitin-like | 152 | 228 | IPR029071 | - | |
| Aip06g01677 | 306 | ProSiteProfiles | Ubiquitin domain profile. | 229 | 304 | IPR000626 | GO:0005515 | |
| Aip06g01677 | 306 | SUPERFAMILY | Ubiquitin-like | 228 | 304 | IPR029071 | - | |
| Aip06g01677 | 306 | Pfam | Ubiquitin family | 155 | 226 | IPR000626 | GO:0005515 | |
| Aip06g01677 | 306 | Pfam | Ubiquitin family | 3 | 74 | IPR000626 | GO:0005515 | |
| Aip06g01677 | 306 | Pfam | Ubiquitin family | 231 | 302 | IPR000626 | GO:0005515 | |
| Aip06g01677 | 306 | Pfam | Ubiquitin family | 79 | 150 | IPR000626 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip06g01677 | Aip-Chr6 | 34179509 | 34180963 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip06g01677 | 1 | 77 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 98.701 | 1.71e-48 | 156 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip06g01677 | - | K08770 | sly:101267758 | 590.882 |