Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01644 ATGTTGGATCTTAATCTCAACGCCGATTCCGCCTCCGGCATCCAAATGGAAAGTTCTGGAAGCTTCAATTCCTCCCTCGCCAATGCCGACACCGAGGACTCATGCTCCTACGGCGGCGCTGAAGCCGTAGCATACAACTTCGCCATACTCAAGAACGCCTTCGGCGTGGACGGAGACGCTGGAGCTTCCGGAGACGACGGATGTGTACGGACAATCCAGCTTTTTCCGATGATCGGAGCCGGCGATGGTGTTGCAGCTGAGAAGTTACGTGGCTCGTCATCAGTGTTGGAATTTGAGACGAAGGAGGATCGCGGCGGTGGTAGTGCGACGGCGGTGGAGCAGAGAATGGTTCCTCAGAGGGCGCAGCAGGTGAAAAAGAGTCGGCGTGGACCGAGGTCGCGAAGCTCGCAGTATCGCGGCGTCACATTTTATCGAAGGACTGGACGATGGGAATCGCATATTTGGTTAGCAATCAATGATTCCGTTATATCTTTCTTTTTGATTTTAATTTTCAGGGCATATGATCGAGCTGCGATCAAGTTCCGTGGCATTGATGCAGATATCAATTTCAACGTCAGCGATTATGATGAAGATATAAAGCAGATGAGTAACTTCACAAAGGAAGAGTTTGTGCATATTCTGCGTAGGCAGAGCACTGGTTTTTCGAGGGGTAGCTCCAAATACAGGGGAGTTACCCTGCACAAATGTGGTAGATGGGAAGCACGCATGGGGCAGTTTCTCGGGAAAAAATATATCTATCTTGGCCTATTCGATAGCGAACTAGAGGCTGCAAGGGCATATGATAGGGCTGCTATAAAGTGCAATGGAAGGGAAGCAGTTACTAACTTTGAGCCCAGCTCATATGAAGGAAAGGTAAATTCTCATGATGAGAATGAAGATAACAGGCAAAGTCTTGATCTTAATTTGGGCATAGCTCCCCCTTCTTTCTCTGAAGAACAAGTCAATAACATTCACAACAATGGGATTGGTTTCCAATTTCAGCCTAGCTGGGATGACATCCCTATTGATAGGAGATTTATGTTTGAGCACTCTGCATCAAGATCACTGAATACTCAGCCACCTCATGGATTCTCCATAGCATCTCAGCATCCTTCTGCTTGGGGCAATACTGATTTCTTTCCCATCTACAAGGAAAGAGCAATAGAGAATATGATGGAAGCCAATCCCTTGCAAAATTGGGCATGGCAAGTCCAAGGTCATTGTGGCGGGGCAACTCCAATTCCACCTGTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACATTAATGCCATCAGCTGCGGATAATCAAATTCATTTTCCAAACAAGACATTCCTCTACCCTAACTTCCCTCCATCGATCGCCAATTCCGGCACCATATCGCCCTTCTACTAA 1395 0.4753 MLDLNLNADSASGIQMESSGSFNSSLANADTEDSCSYGGAEAVAYNFAILKNAFGVDGDAGASGDDGCVRTIQLFPMIGAGDGVAAEKLRGSSSVLEFETKEDRGGGSATAVEQRMVPQRAQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWLAINDSVISFFLILIFRAYDRAAIKFRGIDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDRAAIKCNGREAVTNFEPSSYEGKVNSHDENEDNRQSLDLNLGIAPPSFSEEQVNNIHNNGIGFQFQPSWDDIPIDRRFMFEHSASRSLNTQPPHGFSIASQHPSAWGNTDFFPIYKERAIENMMEANPLQNWAWQVQGHCGGATPIPPVSAAASSGFPSTLMPSAADNQIHFPNKTFLYPNFPPSIANSGTISPFY 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01644 464 Pfam AP2 domain 226 276 IPR001471 GO:0003700|GO:0006355
Aip06g01644 464 CDD AP2 226 286 IPR001471 GO:0003700|GO:0006355
Aip06g01644 464 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 459 - -
Aip06g01644 464 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 459 - -
Aip06g01644 464 SMART rav1_2 137 197 IPR001471 GO:0003700|GO:0006355
Aip06g01644 464 SMART rav1_2 227 290 IPR001471 GO:0003700|GO:0006355
Aip06g01644 464 Gene3D AP2/ERF domain 226 285 IPR036955 GO:0003700|GO:0006355
Aip06g01644 464 PRINTS Ethylene responsive element binding protein signature 266 286 IPR001471 GO:0003700|GO:0006355
Aip06g01644 464 PRINTS Ethylene responsive element binding protein signature 228 239 IPR001471 GO:0003700|GO:0006355
Aip06g01644 464 SUPERFAMILY DNA-binding domain 226 285 IPR016177 GO:0003677
Aip06g01644 464 ProSiteProfiles AP2/ERF domain profile. 227 284 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01644 Aip-Chr6 31777464 31780128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01644 71 329 AP2-EREBP Transcription Factor Family AT4G36920 57.914 8.66e-83 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip06g01644 AP2 1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01644 K09284 - gmx:100808212 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01644 06 31777464 31780128 Aip06g01644 06 31777464 31780128 ECH