Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01608 atgaccggttcggttttcagaaccttgCAAACCAGTCTCTCTAGTCTCCCCTTTCAATTTCACTGCAGAGCGGCAGAGGTTGTACCAAAGCTCTTCCCATTCTTCCTTGAAAACCCTAGTTTTCATCGCGCCGCCGGTGGCCTCACCATCGCCGCCTGGTTCATCGTGGTTGTTCGCCGTTCCTCCTGGTTTATCTTGCTCGAAGGCCCCTGCCGTTCGCCCAACGCCAGCGTCTCCAGGTTCTGCTCCGCCGTCTTCCATCCGTCGTGTTCATCGCCAGCTCACCAGCGTTCGTGGCCAGATCCCCGTCGTCCGTCGCCAGCTCGCCAGTGTTCGTTGCCAGCTTCCCGTCGTCCGTCGCTCTCCCGCAAATCTCTGGTCACTGCCCTCGCCGAAGGCAATGCCTCGGATGCTCAATGGTTTACATACATTTGGCATAACATGCACTTGAACAAATGGGATCAAGCAGCTTTCTGTGGAATTTTACCAAGAATTCGGGGTGGCTCTATGTCTCCCACACTTAATCCAAAAACCAGCTCTTTTGCAGGAAACTTCTCTGATGATTATGTCTTGGTTGAGAAGTTTTGCATTGACAAATACAAATTTTCACATGGAGATGTTGTGGTCTTCAGTTCCCCATTGAATCACAAGGAGAGACACATAAAGAGAATAGTTGCATTATCTGGTGAATGGTTTAGTAGTCGTCAGAACTATGATGTGTTGAAGGTTCCAGAAGGACATTGTTGGGTTGAGGGAGATAATGCGGCTTTTAGCATGGATTCAAAGTTATTTGGATCTATTCCTTTGGGCCTCATACGAGGAAGGGTGACCCATGTTGTGTGGCCTCCACAAAGAATAGGCGCCATCCAGAGTCCTCCACGAGAAGGATTATCTTCTTTATAG 903 0.4817 MTGSVFRTLQTSLSSLPFQFHCRAAEVVPKLFPFFLENPSFHRAAGGLTIAAWFIVVVRRSSWFILLEGPCRSPNASVSRFCSAVFHPSCSSPAHQRSWPDPRRPSPARQCSLPASRRPSLSRKSLVTALAEGNASDAQWFTYIWHNMHLNKWDQAAFCGILPRIRGGSMSPTLNPKTSSFAGNFSDDYVLVEKFCIDKYKFSHGDVVVFSSPLNHKERHIKRIVALSGEWFSSRQNYDVLKVPEGHCWVEGDNAAFSMDSKLFGSIPLGLIRGRVTHVVWPPQRIGAIQSPPREGLSSL 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01608 300 Gene3D Umud Fragment, subunit A 157 290 - -
Aip06g01608 300 PRINTS Bacterial leader peptidase 1 (S26A) family signature 243 262 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aip06g01608 300 PRINTS Bacterial leader peptidase 1 (S26A) family signature 158 174 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aip06g01608 300 PRINTS Bacterial leader peptidase 1 (S26A) family signature 220 232 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aip06g01608 300 CDD S26_SPase_I 164 276 IPR019533 GO:0004252|GO:0006465
Aip06g01608 300 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 158 290 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Aip06g01608 300 MobiDBLite consensus disorder prediction 93 117 - -
Aip06g01608 300 PANTHER INNER MEMBRANE PROTEASE SUBUNIT-RELATED 158 290 - -
Aip06g01608 300 Pfam Signal peptidase, peptidase S26 236 281 IPR019533 GO:0004252|GO:0006465
Aip06g01608 300 Pfam Signal peptidase, peptidase S26 164 230 IPR019533 GO:0004252|GO:0006465
Aip06g01608 300 SUPERFAMILY LexA/Signal peptidase 163 289 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01608 Aip-Chr6 30171405 30175770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01608 170 293 MADS-box Gene Family AT1G29960 37.692 1.45e-18 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01608 K09648 - gmx:100527429 210.69