Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01561 ATGGAGACGCAGCGGATAATGGAGATTCCGCATAGGAGCATAGACAAGAGGCCAAGGAAGAGACCTCGTTTAACATGGGACATGCCTCCTCCTCCGCCTCCTATTCCTCCTCCTCTTCCTTGCAAGGTTCTTCCAGCTTCAAATCGCAGCCAGGAGGTTGGGAATGGCATTGTTCCAAATCATGTTTATTCATCATCCATGTTTTATAGGGGAACGTCTCGCAATGGATCGCCCCCTTGGAGGCCTGATGATAAAGATGGTCACTATGTTTTTGCCGTGGGTGAAAATTTGACACCACGATACAGGATTCTTGGTAAAATGGGTGAAGGAACATTTGGTCAAGTCTTGGAATGTCTTGACAATGAAAAGAAAGAAGTTGTGGCAATTAAAATTGTTCGCTCCCTAATCAAGTATCGTGAGGCTGCAATGACTGAAATTGATGTGCTGATGAGGCTAGCCAAACATGATGTTTCTGGTTCTCGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGCAAAAACAGCTATCGTTCTTTTCCCATTGATCTAGTTCGGGAGTTTGCCAGACAACTTTTGGAGTCTGTAGCATTTATGCATGATTTATGCTTGATTCACACTGATTTGAAGCCAGAGAATATTCTGCTTGTCTCATCAGAATTTATCAAAGTGCCAGATTATAAGTTTTTGTCACGGACCACAAAAGATGGCTCCTATTTCAAGAATCTTCCCAAGACAAGTTCCATTAAACTCATTGATTTTGGGAGTACAACATTTGAGCATCAAGATCATAGTTATGTAGTGTCAACAAGACATTATCGTGCACCAGAAGTTATCTTAGGTCTTGGATGGAATTATCCTTGTGACCTTTGGAGTGTAGGCTGCATATTAGTTGAACTTTGCACAGGTGAGGCACTTTTCCAGACGCATGAGAACTTGGAACATCTTGCCATGATGGAGCGAGTTTTAGGGCCACTGCCTCCCCAAATGGTGGTCAGGGCAGATCGTCGAGCCGAGAAGTATTTTAGAAGGGGTGCACGTTTGGGTTGGCCTGATAGTTCAACTTCAAGAGAAAGCATGAGGGCAGTTTGGAAATTGCCTCGATTACCGAACCTTATAATGCAGCACGTTGATCATTCTGCCGGTGACTTGATTGACCTCTTGCAAGGGCTTTTACGGTATGAACCAGTAGAGCGGCTTAGAGCAAGGGAAGCGTTAAGACATCCCTTCTTTTTGCCAGGAGATCCTAAAAGATATGGTTACTCATTATAA 1326 0.4314 METQRIMEIPHRSIDKRPRKRPRLTWDMPPPPPPIPPPLPCKVLPASNRSQEVGNGIVPNHVYSSSMFYRGTSRNGSPPWRPDDKDGHYVFAVGENLTPRYRILGKMGEGTFGQVLECLDNEKKEVVAIKIVRSLIKYREAAMTEIDVLMRLAKHDVSGSRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREFARQLLESVAFMHDLCLIHTDLKPENILLVSSEFIKVPDYKFLSRTTKDGSYFKNLPKTSSIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPPQMVVRADRRAEKYFRRGARLGWPDSSTSRESMRAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYEPVERLRAREALRHPFFLPGDPKRYGYSL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01561 441 SUPERFAMILY Protein kinase-like (PK-like) 88 433 IPR011009 -
Aip06g01561 441 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 429 - -
Aip06g01561 441 Gene3D Transferase(Phosphotransferase) domain 1 155 429 - -
Aip06g01561 441 SMART serkin_6 101 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g01561 441 PANTHER BNAA07G37640D PROTEIN 1 429 - -
Aip06g01561 441 MobiDBLite consensus disorder prediction 1 35 - -
Aip06g01561 441 ProSiteProfiles Protein kinase domain profile. 101 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g01561 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Aip06g01561 441 CDD PKc_CLK 88 429 - -
Aip06g01561 441 Gene3D Phosphorylase Kinase; domain 1 88 181 - -
Aip06g01561 441 MobiDBLite consensus disorder prediction 1 24 - -
Aip06g01561 441 Pfam Protein kinase domain 101 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01561 Aip-Chr6 28101662 28105931 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01561 101 429 Core Cell Cycle Gene Families AT1G76540 27.193 2.91e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Aip06g01561 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01561 K08287 - gmx:100808061 782.326