Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01559 ATGAAGAGACAGAGAGAAAATGAAGGTTATTGTTCAGTAGAGAGCATTGATTTGGTGAAATGCCTAATGCTTCTTCCTCTTCTCCAAGAAAGAAGCAACAAGTCATCAACGTCATCAATGCATCATAGAAATGGGTCTGCGGAGTTTGAGTGCAAGACTTGCAACCGCAAGTTCTCTTCGTTTCAAGCACTGGGTGGGCACAGGGCTAGCCACAAGAGGCAGAAGCTAGAAGATGGCGAAGAAGAACTGAAGCAACAAGCCAAATCACTGAGCCTGTGGAACAACCCCAAGATGCACGAGTGCTCCATTTGTGGCCTTAAATTCTCTTTAGGCCAAGCACTCGGTGGTCACATGAGAAAACACAGAGGATTAGCCGAATCATCATCATCATCATCATCATCATCATCATCATTAATCAACCATGTTATTGAGAAAACCCCCGTTCTTATGAGATCTAACAGCAAGAGGATTACGTGTCTCAACTTGGATTTGAACTTAACACCTTTCGACCCTCATGATGACTCCTTTGCCAACCCCACACCCATCCCACTTCCTCTTTCTTTCTTCTGA 570 0.4439 MKRQRENEGYCSVESIDLVKCLMLLPLLQERSNKSSTSSMHHRNGSAEFECKTCNRKFSSFQALGGHRASHKRQKLEDGEEELKQQAKSLSLWNNPKMHECSICGLKFSLGQALGGHMRKHRGLAESSSSSSSSSSSLINHVIEKTPVLMRSNSKRITCLNLDLNLTPFDPHDDSFANPTPIPLPLSFF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01559 189 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Aip06g01559 189 SUPERFAMILY beta-beta-alpha zinc fingers 49 121 IPR036236 -
Aip06g01559 189 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Aip06g01559 189 Gene3D Classic Zinc Finger 46 121 - -
Aip06g01559 189 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Aip06g01559 189 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
Aip06g01559 189 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 166 - -
Aip06g01559 189 SMART c2h2final6 99 121 IPR013087 -
Aip06g01559 189 SMART c2h2final6 49 71 IPR013087 -
Aip06g01559 189 Pfam C2H2-type zinc finger 49 74 - -
Aip06g01559 189 Pfam C2H2-type zinc finger 99 122 - -
Aip06g01559 189 PANTHER ZINC FINGER PROTEIN ZAT5 1 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01559 Aip-Chr6 28052428 28052997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01559 1 183 C2H2 Transcription Factor Family AT2G37430 42.781 1.49e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip06g01559 zf-C2H2_6 1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01559 - - aip:107648719 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01559 06 28052428 28052997 Aip02g01300 02 29381593 29382382 PCT