Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01558 ATGAGTCAGATGAAGAGAGAAATAGATCAAATAGACTTGGCGAATTGCCTTATGCTTCTCTCTAATAATCCAATAATTAGAAAGAAAAGAAGCCTCAATAACAATGGTGAAGTGGAATTCGAGTGCAAGACATGTAACCGCAAGTTCCCATCGTTTCAAGCACTTGGAGGCCACAGAACAAGCCACAACAAGAAGCCAAAGCTGGAATCAGAACCCAACAACAACGTTGATACTAAGCCGAAGATGCACGAGTGCTCCATTTGTGGCCAAGAATTCTCTCTTGGTCAGGCACTCGGAGGCCACATGAGAAGGCACAGATCACAAAATGATCAACATCAACAACTTGTGTCTTCTATGAATGAGATTAAACATGTTGTTGCTAAAGTTCCGGTTTTCAAGAGATCTAATAGTCTAAGGGTTAGTTGCTTGGACTTGAACCTAACACCATTGGAGAATGATTTGAAGGTGCTCTTTGGAAGTATTACTCCTAATAATAAGCTTCATGCCTTAGTTTGA 516 0.407 MSQMKREIDQIDLANCLMLLSNNPIIRKKRSLNNNGEVEFECKTCNRKFPSFQALGGHRTSHNKKPKLESEPNNNVDTKPKMHECSICGQEFSLGQALGGHMRRHRSQNDQHQQLVSSMNEIKHVVAKVPVFKRSNSLRVSCLDLNLTPLENDLKVLFGSITPNNKLHALV 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01558 171 MobiDBLite consensus disorder prediction 53 77 - -
Aip06g01558 171 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Aip06g01558 171 MobiDBLite consensus disorder prediction 62 77 - -
Aip06g01558 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Aip06g01558 171 PANTHER ZINC FINGER PROTEIN ZAT5 10 164 - -
Aip06g01558 171 SUPERFAMILY beta-beta-alpha zinc fingers 40 105 IPR036236 -
Aip06g01558 171 SMART c2h2final6 83 105 IPR013087 -
Aip06g01558 171 SMART c2h2final6 40 62 IPR013087 -
Aip06g01558 171 Gene3D Classic Zinc Finger 33 120 - -
Aip06g01558 171 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Aip06g01558 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Aip06g01558 171 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 10 164 - -
Aip06g01558 171 Pfam C2H2-type zinc finger 83 108 - -
Aip06g01558 171 Pfam C2H2-type zinc finger 40 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01558 Aip-Chr6 28005961 28006674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01558 2 159 C2H2 Transcription Factor Family AT2G37430 47.619 1.40e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip06g01558 zf-C2H2_6 5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01558 - - gmx:100527151 179.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03439 09 141033781 141034555 Aip06g01558 06 28005961 28006674 ECH
Aip06g01558 06 28005961 28006674 Aip06g01558 06 28005961 28006674 ECH