Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01541 ATGACTTCGTTCCTGAAGCCTGAGAATGCCCTCAAAAGGGCTGAAGAATTGATCAATGTTGGGCAGAAGCAGGATGCTCTGCAGACACTGCACGACCTTATTACCTCGAAAAGGTACAGGGCATGGCAGAAGACCCTCGAAAGGATTATGTTCAAGTATGTGGAACTCTGTGTAGACATGCGCAAGGGACGGTTTGCAAAGGACGGGCTCATTCAGTACCGTATCATATGCCAGCAAGTGAATGTTAGCTCCCTGGAGGAGGTTATCAAGCACTTCATGCACCTATCCACTGAAAAAGCTGAACAAGCCCGTAGCCAGGCACAGGCATTGGAAGAAGCTCTTGATGTCGATGATTTAGAGGCTGATAAAAGGCCAGAGGACTTGATGCTGAGCTATGTCAGTGGGGAGAAAGGAAAGGACAGATCTGATCGGGAGCTTGTTACCCCTTGGTTTAAATTTCTTTGGGAAACATATAGGACTGTGCTTGAAATATTGCGCAACAACTCAAAGCTGGAAACTTTATATGCTATGACTGCTCATCGGGCTTTTCAGTTTTGTAAGCAATATAAGCGAACCACAGAGTTCCGCAGACTATGTGAAATCATAAGAAACCATTTGGCCAATCTTAATAAGTATCGTGATCAACGAGACAGACCAGATCTTTCAGCTCCTGAGAGCTTGCAACTGTATCTGGATACAAGATTTGAGCAGCTGAAAATTGCAACAGAACTCGAACTTTGGCAGGAAGCTTTTAGATCTGTTGAAGATATACATGGACTGATGTGCTTGGTCAAGAAGACGCCGAAGCCGTCTTTGATGGTTGTTTACTATGCTAAGTTGACAGAAATATTTTGGATAGGCTCAAGTCATCTATATCATGCATATGCATGGTTCAGGCTATTTTTATTGCAAAAGAGTTTCAATAAGAATCTGAGTCAGAAGGATTTGCAATTAATAGCTTCATCAGTTGTTCTAGCTGCACTTTCAGTGCCTCCTCATGATCGCACTCATGGAGCATCTCATTTGGAACTGGAGCATGAAAAAGAAAGAAATTTGAGGATGTCTAATCTTATTGGGTTTAATATGGAAACTAAACCTGAAAGCAGAGAAATGCTCTCAAGATCATCACTTCTTGCTGAACTGGCATCCAAGGGCGTGATGTCTTGTGTAACTCAGGAAGTGAAGGATATTTACAACATTTTTGAACATGAATTCCTTCCTTCAGATCTTGCAGTTAAGGTGCAGCCCTTGTTGGCTAAAATATCAAAGTTAGGGGGTAAGCTTTCCACTGCTTCATCTGTCCCAGAGGTGCAGCTGTCTCAATATGTCCCTGCACTAGAAAAGTTAGCTACCTTGAGGTTGCTCCAGCAGGTGTCTAATGTGTACCAGAGTATGAAGATTGAGACCTTATCTGGCATGATCCCATTTTTTGATTTTTCTGTTGTGGAGAAGATTTCTGTTGATGCTGTTAAACAGAAGTTTCTTTCAATGAAAGTTGACCACATGAGAAATGTTGTAATTTTCTGCAAAATGGTATGTGCACCTCAGTATGGCCATGTTGTTGCCAAGGAACATAAACGGCTTCTAGCTCGAAAATCTATTATTGAGAAGAGGAAAGAAGAACAAGAGCGGCAGCTTCTGGAAATGGAGCGTGAGGAAGAATCAAAGAGGTTAAGAGTGCAGAAAATGAATGAAGAGGCTGAAAAATTGAGAGTTGCAACTGAATTTGAGCAGAGGAAAAATGAGAGGCTCCGCCAAGAGATAGAGGAAAGAGAAAAGGAAGAAACTAAAGCTTTGTATGAGGAAGCTGAGAAAAAATTTAAAAACTATAAGGGGAAAAAGCCACTTATTGAGGGGGATAAAATTACCAAGCAAACCTTGATGGAATTGACTTTGAATGAACAACTCCGAGAAAGACAGGAAATGGAGAAAAAACTCCAAAAACTGGCAAAAACCATGGATTATTTGGAAAGGGCAAAAAGGGAAGAGGCTGCTCCCTTGATTCATGCTGCATATGTAAAGCGCCAAGAGGAAGAGAAGATTCTTCATGAGCATGAGCAGCAGCAAGAGATTGAATTGAGTAGACAACGTCATGAAGGAGATCTCAAGGAGAAGGAGAGGCTTGCCAGAATGATTGGCAATAAAGAGATATATCAAGAGAAAGTTGTTAGTCGACGCCAGGCTGAATTTGATAGATTGAGGAAGGAAACGGAGGAGCGGATCTCTAGGATATTACAGTCCAGGAAACAGGACAGGGAAAGGTTGAGGAAGTGGAAGTATTATCTGAATGTGGAAGAAGAGAGGCAGCAAAAGTTGCGCGAGGAGGAAGAAGCAAGGAAGCGCGAAGAGGCTGAGAGGCGAAGGAAGGAGGAGGCTGAACGTTTAGCAAAATTGGAAGAGATAGCAGAGAAACAGAGGCAAAGAGAGCGGGAACTGGAAGAAAAGGAAAGACAAAGAAGAGAGGCATTGTTGGGAAGAGGTGCCGAGCCAGCTTCAAGGCCTACTGAGAGTCTTGCACGCCCACTCGAGTCTGGATCTGCTGCTCCTGCTGCAGCTGCCGCTGCTGCTGCACCAGCCCCAGGGAAGTATGTCCCTAGGTTCCGCCGTGAGAAACCTGATGGTGCAGCTGCTCCTCCTGAAACAGACCGCTGGAGTAACAGTAGCAGCCGGCCAGATGGTGACAGGTGGGGTCGTGGTGAAGATCGCAGATCAGCATTTGGTTCTGGTGTGGGTTCTAGGTCATCTTCAACCTGGTCATCCTCGAGGAACCCTCGTTAA 2778 0.442 MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLETLYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKIATELELWQEAFRSVEDIHGLMCLVKKTPKPSLMVVYYAKLTEIFWIGSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDRTHGASHLELEHEKERNLRMSNLIGFNMETKPESREMLSRSSLLAELASKGVMSCVTQEVKDIYNIFEHEFLPSDLAVKVQPLLAKISKLGGKLSTASSVPEVQLSQYVPALEKLATLRLLQQVSNVYQSMKIETLSGMIPFFDFSVVEKISVDAVKQKFLSMKVDHMRNVVIFCKMVCAPQYGHVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLRVQKMNEEAEKLRVATEFEQRKNERLRQEIEEREKEETKALYEEAEKKFKNYKGKKPLIEGDKITKQTLMELTLNEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIHAAYVKRQEEEKILHEHEQQQEIELSRQRHEGDLKEKERLARMIGNKEIYQEKVVSRRQAEFDRLRKETEERISRILQSRKQDRERLRKWKYYLNVEEERQQKLREEEEARKREEAERRRKEEAERLAKLEEIAEKQRQRERELEEKERQRREALLGRGAEPASRPTESLARPLESGSAAPAAAAAAAAPAPGKYVPRFRREKPDGAAAPPETDRWSNSSSRPDGDRWGRGEDRRSAFGSGVGSRSSSTWSSSRNPR 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01541 925 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 524 - -
Aip06g01541 925 Coils Coil 632 662 - -
Aip06g01541 925 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 510 IPR027512 GO:0005852
Aip06g01541 925 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 515 872 IPR027512 GO:0005852
Aip06g01541 925 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 903 IPR027512 GO:0005852
Aip06g01541 925 SMART PINT_4 441 524 IPR000717 -
Aip06g01541 925 Coils Coil 761 821 - -
Aip06g01541 925 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 510 - -
Aip06g01541 925 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 515 872 - -
Aip06g01541 925 Gene3D UVR domain 217 268 - -
Aip06g01541 925 MobiDBLite consensus disorder prediction 908 925 - -
Aip06g01541 925 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Aip06g01541 925 Pfam PCI domain 373 508 IPR000717 -
Aip06g01541 925 Gene3D - 269 342 - -
Aip06g01541 925 Gene3D - 351 494 - -
Aip06g01541 925 MobiDBLite consensus disorder prediction 769 826 - -
Aip06g01541 925 Coils Coil 525 613 - -
Aip06g01541 925 Coils Coil 93 120 - -
Aip06g01541 925 MobiDBLite consensus disorder prediction 887 902 - -
Aip06g01541 925 MobiDBLite consensus disorder prediction 769 925 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01541 1 909 Eukaryotic Initiation Factors Gene Family AT4G11420 67.345 0.0 1215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01541 K03254 - gmx:100803796 1328.92