Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01484 ATGGCTGATGGGGCTGGTGATGATTTGTTTAAAGAGCTATGGAGGTTGTGTGCAGGGCCATTAATGGATGTTCCTTGTGTTCAAGACAGAGTTTTCTATTTCCCTCAGGGTCACATTGAATTGTTGCCAGAACCTACAGAACAAGAATTGAGGCAGATGAAGAACCAGAAATCTCCCAAATACGATCTTCCGTCGAAGATCTTATGCCGTGTTATCGATGTTAAGTGTCTGGCCGAGATGGAAACCGACGAGGTTTATGCTCGAATCACTTTGCAGCCATCTTCAGATAATGATCCTCTAGATCCTAATCCAATTTGTTCCGAGAAACCGAAACAGAAATTTTACTCATTTTGTAAGACACTGAGTACCTCAGATACTAGCACACATGGAGGATTTTCGGTTCTTCGGAAGCACGCTAATGAATGCTTGCCTCAATTGGATATGACAATGGAAAATCCTACTCAGGAGTTGGTAGCAAAGGATATTCATGGGGTTGAATGGAAGTTTAAGCATATATACCGAGGACATCCGAAGAGGCACCTGCTTACAACTGGCTGGAGTGCATTCGTTGCAGCCAAGAAATTGGTTGTTGGAGATTCTTTTGTTTTTCTAAGGGGAGAGAATGGACAACTGAGAGTAGGCATTAGGCGTTTGAATCCGCCGCAGAGTCCTACACCTTCCTCGGTGGTGTCGACACAAAACATGCGCCTCGGAGTGATTGTTACTGCAAGCCATTCTGTTATGACTAGTACCATGTTTGTGGTTTATTACAAGCCAAGGACTAGCCAGTTTATTGTTAGTTTAAACAAATATATTGACACGATGAACAATGACTTCAAAATCGGCATGCGATTCAAGATGAGACATGAGGGTGAAGATCCACTTGACAAAAGGTTTTGTGGTACTATAGTTGGAGTTGGAGATGAATCTCGAGAATGGCCGAATTCTCAATGGAGGTCATTGAAGGTTCAATGGGATGAACCAGCAACAATGCAAAGACCAGATAGAGTTTCATGTTGGGAGATTGAACCTCTTGTTACTTCGCCTTTGAATACGATTCAACCGATGGCGAAGGGAAAAAGATCAAGGCATGCTGAGGCTTCATCTTCTGCTGCTTCAGGTAGCAAAGAAAGCCAAGTAGCTACAATATGGCATCCACCACATTTGAATGGCAATGGAAATTCTTCTCAAGACCTCAAAAACAACAAAGCCGTCGTCCCGGCCGGTCCAGCTGGCGAAGGTCCGGCATGCGACCATAACGAAGACGGGAAGAAGGGCATGGATTGCTGGTTGTTTGGGGTGAATTTGACTAGCAGCTATAGTAATGTTGTTACCCCTTTGGAGAAAGAACTTTGGTGTGAAGCTTCAACTATCCTTCATTGTGGTCCCAAAGAATCTATTATTGTTGGTGCATGTGAGACTGAGAAGGTTCAGAGTCTCAATAACCATTCACTGTCCAACAAGCAGGGCCATGTACCATCCATGAGGACTAGGACTAAGGTGAAAATGGAAGGTGTAGCAGTTGGTCGTGCAATTGACTTGACCACATTAAATGGTTATGATGAACTCATAGTTGAGCTTGAGAAAATGTTTGACATTGAAGGAGAAATTATATCTCAGAAGAAATGGGCTGTTACTTTCACTGATGAAGAAAATGACCTTATGCTTCTTGATGATGATTTATGGCAGTGA 1692 0.4314 MADGAGDDLFKELWRLCAGPLMDVPCVQDRVFYFPQGHIELLPEPTEQELRQMKNQKSPKYDLPSKILCRVIDVKCLAEMETDEVYARITLQPSSDNDPLDPNPICSEKPKQKFYSFCKTLSTSDTSTHGGFSVLRKHANECLPQLDMTMENPTQELVAKDIHGVEWKFKHIYRGHPKRHLLTTGWSAFVAAKKLVVGDSFVFLRGENGQLRVGIRRLNPPQSPTPSSVVSTQNMRLGVIVTASHSVMTSTMFVVYYKPRTSQFIVSLNKYIDTMNNDFKIGMRFKMRHEGEDPLDKRFCGTIVGVGDESREWPNSQWRSLKVQWDEPATMQRPDRVSCWEIEPLVTSPLNTIQPMAKGKRSRHAEASSSAASGSKESQVATIWHPPHLNGNGNSSQDLKNNKAVVPAGPAGEGPACDHNEDGKKGMDCWLFGVNLTSSYSNVVTPLEKELWCEASTILHCGPKESIIVGACETEKVQSLNNHSLSNKQGHVPSMRTRTKVKMEGVAVGRAIDLTTLNGYDELIVELEKMFDIEGEIISQKKWAVTFTDEENDLMLLDDDLWQ 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01484 563 Pfam AUX/IAA family 488 552 IPR033389 -
Aip06g01484 563 ProSiteProfiles PB1 domain profile. 496 563 IPR000270 GO:0005515
Aip06g01484 563 PANTHER AUXIN RESPONSE FACTOR 11 4 387 - -
Aip06g01484 563 PANTHER AUXIN RESPONSE FACTOR 11 421 563 - -
Aip06g01484 563 CDD B3_DNA 116 217 IPR003340 GO:0003677
Aip06g01484 563 MobiDBLite consensus disorder prediction 352 379 - -
Aip06g01484 563 Pfam B3 DNA binding domain 117 217 IPR003340 GO:0003677
Aip06g01484 563 SUPERFAMILY DNA-binding pseudobarrel domain 105 244 IPR015300 -
Aip06g01484 563 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Aip06g01484 563 Pfam Auxin response factor 243 322 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip06g01484 563 Gene3D - 492 563 - -
Aip06g01484 563 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 421 563 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip06g01484 563 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 387 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip06g01484 563 Gene3D - 278 349 - -
Aip06g01484 563 MobiDBLite consensus disorder prediction 388 402 - -
Aip06g01484 563 MobiDBLite consensus disorder prediction 384 403 - -
Aip06g01484 563 SMART B3_2 117 219 IPR003340 GO:0003677
Aip06g01484 563 Gene3D - 115 218 IPR015300 -
Aip06g01484 563 SUPERFAMILY CAD & PB1 domains 490 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01484 Aip-Chr6 24973971 24977989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01484 7 562 B3 DNA Binding Superfamily AT2G46530 50.442 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip06g01484 B3 3.9e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01484 K14486 - gmx:100795763 676.011