Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01438 ATGCTTCTGATGGGTCTAGAAAAGACGCATCCACCTCTTATAGGCATCTGGTCACTCATTCCCTGGTTAGCTGTCGATGTGTGGCTAGTTCTGTTGAGCTTTGCTCCGCTTCTTATTCTTGCACTTGCGCATGCATATTCTTCTTTTTATTCACTTGCAGCATCTAGCCTTTCTTTGAAAGCAATTACCATGTCTTATACAAAGACGTCTTCGCATGGTCTTATGAGGATATGCCTAGCTGCTGCTTCTGCTTCGGCTTCATCTTCTTCATCTGTATCACACCCATTCTGCAATTCCCACCCACATATTCATAATTCTTACTTCCCAGCATCAAAATGTCGTCGTCGAGGCCAAGCCAATCAAAGCTCCATCCAAACTCTGAGGAGTCCGGTAGTTCCTTTGACAACTCGAATTCGGTGCGGTTGTCTTCCGAAGGGGAAGTTCGTCCAGCCCTTTGGGTGCTTGCTAGCTTTGGATGAGAAGACATTTAGGGTCATTGCATACAGTCAGAATGCATCTGAAATGCTTACCATGGTTAGCCATGCTGTCCCAAGTATTGGTGATCACCCTGCTCTTGCCATTGGCACCGACATTCGGACTATTTTCACGGCCTTAAGTGTTGCTGCTTTGCAAAAGGCCCTTGCAGTTCCGGAGGTTTCACTCCTTAACCCCATTCTAGTTCATTGCATGACTTCTGAGAATCCCTTCTATGAAATTGTCCATCGTGTTACCGGTAGTTTGATCATTGATTTTGAGCCTGGTGATGGCTTTAAATTTCATGAGGATGATCATGGGGAAGTAATTGCTGGGGTTGCAAAGCCAGGCCTTGAGCCATATCTGGATTTGCACTATCCAGCCACTGATATTCTCCAAGAGCTCCTCATAGTTTCCACTTGCCACTTGCAATATATGAATTCAATTGCTTCCCTAGTTATGGCAGTTGTGGTCAATGATCATGAAGATGGGGATGGCTCTGATGTTGCTCAGCCACAAAAGAGAAAGAGACATTGGGGTTTAGTAGTTTGCCATAACACTAATCCAAGGTTTGTTCCCTTTCCTCTAGGGTATTGTGAATTTTTGGCTCAAGTATTTGCCATCCATGTGAATAAGGAATTAGAGTTAGAATATCAGATTGTTGAGAAGAACATCCTGCGCACGCAGACACTCTTGTGCAATATGCTAATGCGAGATGCACCCTTTGGTATTGTATCACAGAGCACTAATATAATGGATCTTGTGAGATGTGATGGAGCAACACTCTTGTATAGAGACAAGGTATGGAGATTAGGTGTGGCTCCAAGTGAATCTCGCATAAGAGAGTTAGCTTTATGGCCCTCTAAGTGCCATAAGGACTCCACGGGTTTGAGTACAGATAGATTGTCTAATGCAGGCTTCCCAAGAGTTGCTGCTCTTGGTGACGTTGTTTGTGGAATGGTAGCTGTGAAAATTTCTTCCATGGACGTAGTTTTCTGGTTTAATCACACACTGCTGCAGAAATCAGATGGGGTGGTGTAA 1515 0.4436 MLLMGLEKTHPPLIGIWSLIPWLAVDVWLVLLSFAPLLILALAHAYSSFYSLAASSLSLKAITMSYTKTSSHGLMRICLAAASASASSSSSVSHPFCNSHPHIHNSYFPASKCRRRGQANQSSIQTLRSPVVPLTTRIRCGCLPKGKFVQPFGCLLALDEKTFRVIAYSQNASEMLTMVSHAVPSIGDHPALAIGTDIRTIFTALSVAALQKALAVPEVSLLNPILVHCMTSENPFYEIVHRVTGSLIIDFEPGDGFKFHEDDHGEVIAGVAKPGLEPYLDLHYPATDILQELLIVSTCHLQYMNSIASLVMAVVVNDHEDGDGSDVAQPQKRKRHWGLVVCHNTNPRFVPFPLGYCEFLAQVFAIHVNKELELEYQIVEKNILRTQTLLCNMLMRDAPFGIVSQSTNIMDLVRCDGATLLYRDKVWRLGVAPSESRIRELALWPSKCHKDSTGLSTDRLSNAGFPRVAALGDVVCGMVAVKISSMDVVFWFNHTLLQKSDGVV 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01438 504 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 257 356 IPR016132 -
Aip06g01438 504 SUPERFAMILY GAF domain-like 380 498 - -
Aip06g01438 504 Gene3D - 256 377 IPR029016 -
Aip06g01438 504 PANTHER TWO-COMPONENT HISTIDINE KINASE 142 253 - -
Aip06g01438 504 PANTHER TWO-COMPONENT HISTIDINE KINASE 297 493 - -
Aip06g01438 504 PANTHER PHYTOCHROME A 142 253 - -
Aip06g01438 504 PANTHER PHYTOCHROME A 297 493 - -
Aip06g01438 504 SUPERFAMILY GAF domain-like 257 369 - -
Aip06g01438 504 Pfam PAS fold 145 253 IPR013654 GO:0006355
Aip06g01438 504 Gene3D - 380 500 IPR043150 -
Aip06g01438 504 PANTHER TWO-COMPONENT HISTIDINE KINASE 257 291 - -
Aip06g01438 504 Pfam Phytochrome region 385 496 IPR013515 GO:0006355|GO:0009584
Aip06g01438 504 Gene3D PAS domain 145 253 - -
Aip06g01438 504 Coils Coil 369 389 - -
Aip06g01438 504 SUPERFAMILY PYP-like sensor domain (PAS domain) 148 254 IPR035965 -
Aip06g01438 504 PANTHER PHYTOCHROME A 257 291 - -
Aip06g01438 504 Pfam GAF domain 296 372 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01438 Aip-Chr6 23690912 23693380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01438 143 495 Histidine Kinase Gene Family AT1G09570 55.507 4.70e-156 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01438 K12120 - pop:7482219 469.544