Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01431 ATGGATGCTTCTAGAACTTCAAGCAGCACCGGCAACAAGAGTAACAGCACCAAGCTGCTTAATCCATGGATGCTCCATTTCCAGAAGCTCGCTCTTGAACTCAAGTGCCCTCTCTGTTTGAGCTTGTTCAAGAGGCCGGTTTTGCTACCCTGCAACCACTTATTCTGCAATTCGTGTTTGGCGGATTTCACAACGTCTGGTTCCGAATGTGTTGTCTGCAATGCGAAGTATGCTCAATCAGATATAAGGCATGTGCCTTTTGTGGAAAACGTGGTAGGGATTTATAGGAGCTTGGATGCAACCTTTTCTGCTAGTTTGTTTAAGCAACATTCTTCTGATGTGAGGGTTTTGGAGCCATGCCAAGGGTTACAAAATTCAGTTCATAGGAGCAAGGATACTGATAATGTTGGGGCTGGCAAGAATCAGAAACGGAAGATGAGTGGTCTTGCGGTGCATGATAAGGGCGAGGAGATTGAGGTGTATTCTGGGGGGCAGGTTGAGAATCCAAGGCGGTCTTCCCAGATGAAAATTGAGGGTCGTGAAGACTCTGGGGTTGTTGAAATGGATGTGAATCAAGGGACGCAATCAGCACCAGATAGTCCACCATTTTGTGACACCAAGGGCTCAGAGAATGACTGCAGTGATCAAGATAGCGAGCATCTTTTGCCTTCTGGGGCATTGGAAAATTCCTCATCGAAAAGAGCAAGTACAGGAAATGGAAATTTGAAGGAAAGAATGACACAACTGAGGTCTGAAAGTTCAGCCTCTGAAACGGAGGGTCTTACAAGAGAGCTCAAGAGGCAGAAAAACCTTACCCATGGTAATGATCAACTCAGAACTGAAAAGGACCCTGGTGCCGTGATGCTTGCTAATGTAGATGACTCTTATTCAAGTACATGTTCATTTTGCCAGTCCTCAAAAATCTCAGAGGCTACTGGACCAATGCTGCATTGTGCAAATGGGAATTTGGTTATTGGTGATGCAGCAAAGCAACCAAATGTCATCCATGTACACAAAGTTTGCAGTGATTGGGCACCACAAGTTTACTTTGTTGGTGACACTCTTAAGAATGTGAAGACAGAACTGTCAAGGGCAGCAAAGCTTAAATGCAGCAAATGTGGCTTAAAGGGAGCTGCACTTGGATGCTATGTCAAATCCTGCAGAAGAACTTATCATGCTCCTTGTGCAATGGATGTCTCAAATTGCCGTTGGGATTATGAGGGTTATCTTTTGCTTTGTCCTGGTCATTCTCATGTGAAATTTCCTAGTGAGAAATCCAAGTCTAGGAAACAAACAACTGATAAGCATCCCACTTCATCTCACCTGCCATCTCAATGTTCAAACGATCTGGGATGTTCAAAGGATGAAGATAAAAAATTGCTTTTTTGTGGATCTGCTTTATCAACCGAGGAAAAGATACTTCTGATAAATTTTGCAAGCAAGATTGGTGCTAAAGTTACCAAGACTTGGACTTTAGAAGTCACCCATGTGATTGCAGCTACTGATGAAAATGGAGCATGCTCTAGGACACTAAAAGTTCTTATGGCAATTCTAAATGGAAAATGGGTTCTCAAAATGGATTGGGTAAAAGCAAGCATGGAAGAGATGAATCCTCTTGGAGAAGAACCATATGAGATCACACTTGACAACCAAGGGTGTCACGGTGGCCCAAAAGCTGGCAGACTCAGGGCAATGGTCAATGAGCCAAAGTTATTTACTGGCTTAAAGTTTTATTTGTCCGGAGATTATGTGACAACATATAAGGAAGATATTGAAGAATTAATTGAAGTGGGAGGAGGTGCTGTTTTGAGAAGCAAAGAAGAATTGGAAGCAAAAAAGCTTGAATTCGAAGGGGTTCCTTCGAAGTTCCTTGTTGTTTACAACCTTGATCCTCCACAGGGATGCAAGTTAGGAGAGGAAGTTTCGATTATTTGGCAAAGAATGAATGATGCAGAGGAACTAGCATCTAGTACTGGTTCTGAAGTCATTGGTCACACGTGGATTCTGGAGTCAATTGCAGCATGTAAACTTCAGCCTTTTGTTATCTAA 2049 0.4295 MDASRTSSSTGNKSNSTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCNSCLADFTTSGSECVVCNAKYAQSDIRHVPFVENVVGIYRSLDATFSASLFKQHSSDVRVLEPCQGLQNSVHRSKDTDNVGAGKNQKRKMSGLAVHDKGEEIEVYSGGQVENPRRSSQMKIEGREDSGVVEMDVNQGTQSAPDSPPFCDTKGSENDCSDQDSEHLLPSGALENSSSKRASTGNGNLKERMTQLRSESSASETEGLTRELKRQKNLTHGNDQLRTEKDPGAVMLANVDDSYSSTCSFCQSSKISEATGPMLHCANGNLVIGDAAKQPNVIHVHKVCSDWAPQVYFVGDTLKNVKTELSRAAKLKCSKCGLKGAALGCYVKSCRRTYHAPCAMDVSNCRWDYEGYLLLCPGHSHVKFPSEKSKSRKQTTDKHPTSSHLPSQCSNDLGCSKDEDKKLLFCGSALSTEEKILLINFASKIGAKVTKTWTLEVTHVIAATDENGACSRTLKVLMAILNGKWVLKMDWVKASMEEMNPLGEEPYEITLDNQGCHGGPKAGRLRAMVNEPKLFTGLKFYLSGDYVTTYKEDIEELIEVGGGAVLRSKEELEAKKLEFEGVPSKFLVVYNLDPPQGCKLGEEVSIIWQRMNDAEELASSTGSEVIGHTWILESIAACKLQPFVI 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01431 682 SUPERFAMILY BRCT domain 460 547 IPR036420 -
Aip06g01431 682 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 17 680 - -
Aip06g01431 682 ProSiteProfiles Extended PHD (ePHD) domain profile. 297 417 IPR034732 -
Aip06g01431 682 SMART BRCT_7 452 536 IPR001357 -
Aip06g01431 682 SMART BRCT_7 569 675 IPR001357 -
Aip06g01431 682 ProSiteProfiles BRCT domain profile. 456 546 IPR001357 -
Aip06g01431 682 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 17 680 IPR031099 GO:0006281|GO:0006974
Aip06g01431 682 MobiDBLite consensus disorder prediction 191 279 - -
Aip06g01431 682 MobiDBLite consensus disorder prediction 420 445 - -
Aip06g01431 682 CDD BRCT_Bard1_rpt1 460 535 - -
Aip06g01431 682 MobiDBLite consensus disorder prediction 127 148 - -
Aip06g01431 682 MobiDBLite consensus disorder prediction 420 436 - -
Aip06g01431 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 419 IPR013083 -
Aip06g01431 682 MobiDBLite consensus disorder prediction 257 279 - -
Aip06g01431 682 ProSiteProfiles Zinc finger RING-type profile. 36 74 IPR001841 -
Aip06g01431 682 Pfam BRCA1 C Terminus (BRCT) domain 459 532 IPR001357 -
Aip06g01431 682 Pfam Zinc finger, C3HC4 type (RING finger) 33 77 - -
Aip06g01431 682 SUPERFAMILY RING/U-box 33 96 - -
Aip06g01431 682 Pfam PHD-like zinc-binding domain 338 416 - -
Aip06g01431 682 Pfam BRCT domain, a BRCA1 C-terminus domain 569 679 IPR001357 -
Aip06g01431 682 SMART ring_2 36 73 IPR001841 -
Aip06g01431 682 SUPERFAMILY BRCT domain 571 679 IPR036420 -
Aip06g01431 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 106 IPR013083 -
Aip06g01431 682 ProSiteProfiles BRCT domain profile. 567 672 IPR001357 -
Aip06g01431 682 Gene3D BRCT domain 456 562 IPR036420 -
Aip06g01431 682 Gene3D BRCT domain 569 675 IPR036420 -
Aip06g01431 682 MobiDBLite consensus disorder prediction 223 256 - -
Aip06g01431 682 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01431 Aip-Chr6 23439238 23444398 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01431 490 603 Core DNA Replication Machinery Family AT4G02110 30.833 8.02e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01431 K10683 - gmx:100784883 970.304