Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01427 ATGGCAGAAGCATGGCGTAATGGCAGCGGAAGCACAACAAAACAAAGGGAAAGTTCGCTAAAACAGGCGGAACCACAGCGAATAACGGCAAAACCGAAGCGTCGCGATGACATTAGAGTAGCGCGGAGAGAAATGGTGGCTGGACAAGTTGAAGAACGAAGACAAGGCCAGAGAGCTGAGGGAATTATGAAGTGGAAGCTGCGTTGGTGGGGAGGGAGAGGGGGAGAGTTCGTTATGGAGAGGAAGGAATTAGGGTTGGAGAAGCTTTTGGAGTGCTTCATTCAAAGTTTCAAATTTTCTTTTTCTTCTTTTGTGTTTCCGACTTCTCCACCGGTTCCTGAGTGGAGAGCTCAATTCAATTCAATTCACCACCGAAGTCATGATTCTAGAGATCATGCTTGGAACTTGGAAGTGGAATTATGGCATGATCTTGCTTATGTCTATATATCTCTGTCATGTTGGCATGATGCAGAGATGTGTCTTTCTAGATCTAAAGCCATAAAACCATACACTGCATCAAGGTTGCATGCACTGGGTACAATGCACGAGGCAAAGGGCCTTTACAAGGAGGCTCTAAAAGCATTTCGAGATGCTTTGGATATCGATTCGGGACATGTCCCTAGCTTGATATCCGCTGCTGTGGTTCTTAGACAGTTCAATGGTCAGTCAAATGCTGCCATCAGAAGCTTTCTGATGGACGCACTACGGCATGACAGGATGAACGCTTCTGCATGGTACAATCTTGGCATTCTTCACAAGGCCGAGAATAAAATATCAGAAGCTGCAGAATGTTTTGAGGCAGCAAACTCCCTAGAAGAATCAGCACCAGTTGAACCATTCAGATGA 846 0.4574 MAEAWRNGSGSTTKQRESSLKQAEPQRITAKPKRRDDIRVARREMVAGQVEERRQGQRAEGIMKWKLRWWGGRGGEFVMERKELGLEKLLECFIQSFKFSFSSFVFPTSPPVPEWRAQFNSIHHRSHDSRDHAWNLEVELWHDLAYVYISLSCWHDAEMCLSRSKAIKPYTASRLHALGTMHEAKGLYKEALKAFRDALDIDSGHVPSLISAAVVLRQFNGQSNAAIRSFLMDALRHDRMNASAWYNLGILHKAENKISEAAECFEAANSLEESAPVEPFR 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01427 281 ProSiteProfiles TPR repeat profile. 172 205 IPR019734 GO:0005515
Aip06g01427 281 MobiDBLite consensus disorder prediction 1 25 - -
Aip06g01427 281 MobiDBLite consensus disorder prediction 1 37 - -
Aip06g01427 281 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 116 281 - -
Aip06g01427 281 SUPERFAMILY TPR-like 138 272 IPR011990 GO:0005515
Aip06g01427 281 Pfam Tetratricopeptide repeat 242 273 IPR019734 GO:0005515
Aip06g01427 281 Pfam Tetratricopeptide repeat 174 203 IPR019734 GO:0005515
Aip06g01427 281 PANTHER PROTEIN NPG1 116 281 IPR043376 -
Aip06g01427 281 SMART tpr_5 242 275 IPR019734 GO:0005515
Aip06g01427 281 SMART tpr_5 138 171 IPR019734 GO:0005515
Aip06g01427 281 SMART tpr_5 172 205 IPR019734 GO:0005515
Aip06g01427 281 Gene3D Tetratricopeptide repeat domain 119 277 IPR011990 GO:0005515
Aip06g01427 281 ProSiteProfiles TPR repeat profile. 242 275 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01427 Aip-Chr6 23357671 23361081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01427 135 281 Calmodulin-binding Proteins AT4G28600 55.629 1.46e-48 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01427 K21843 - gmx:100784353 252.292