LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip06g01412	ATGGATTCTGCAAGAAGTTGGCTTCACAAATTTCAGCCACGAGAGAAAGGGAAGAGCGCTAGCAGAAGGAAAGAAGGTGATGGAGAAGAGGATAATAATGGTGCTCCCATGGATGAAGCAGCTCTTTCAAATGTCACAAAGCAGAAGGTTGCAGCAGCTAAACAGTATATTGAGAATCATTACAAAGAGCAAATGAAGAGCCTTCAGGAAAGGAAGGAGCGTCGAACCATCTTGGAAAAGAAGTTAGCTGATGCTGATGTGTCTGAGGAGGATCAAAACAACCTACTTAAATTTCTAGAGAAAAAAGAAACTGAATATATGCGCCTTCAGAGGCATAAGATGGGAGTTGATGATTTCGAGTTATTGACCATGATTGGCAAAGGTGCATTTGGAGAGGTTAGAGTATGTAGAGAAAAGACAACAGGTCATGTATATGCAATGAAAAAATTAAAGAAAGCAGAGATGCTTCGTAGAGGCCAGGTAGAACATGTTAGAGCTGAGAGAAATCTCCTTGCCGAGGTTGACAGCAATTGCATAGTCAAACTTTATTGTTCTTTTCAAGATGAGGATCATCTGTATCTTATTATGGAGTACCTACCTGGTGGGGATATGATGACTCTACTTATGAGAAAGGACATCTTGACTGAAGATGAAACCCGTTTTTATATAGGAGAAACCGTTCTGGCTATTGAGTCTATACATAAACACAATTACATACATAGGGACATTAAGCCTGATAATTTATTGCTCGATAGATTCGGACATGTGAGGCTGTCAGATTTTGGACTTTGTAAACCATTAGACTGTAGTACACTTGAAGAAGCAGATCTTTCTGTAGGTCAAAATCTTCAGGGATCTGCACAAAATGATGGCACAACTCCAAAACGCACACAACAAGAACAGTTGGAACACTGGCAGCAAAACAGAAGGACTCTTGCCTATTCTACTGTTGGTACACCTGATTATATTGCTCCAGAAGTCTTATTGAAAAAGGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCCATTATGTATGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGATCCAATGTCAACATGTAGGAAGATAGTAAACTGGAAATCTCACTTGAAATTTCCAGAAGAAGCAAGACTATCTCCAGAGGCTAAAGATCTTATTAGTAAGCTTTTGTGTAACGTCCCTCAGAGGCTAGGATCAAATGGCGCAGATGAAATAAAGGCTCATCCATTTTTTAATGGTGTTGTTTGGGACAAGTTGTATCAAATGGAAGCTGCATTTATTCCTGAAGTCAATGATGAGTTAGATACTCAAAATTTTGAAAAGTTTGAAGAGTCAGATAACCATGTTCTGAAATCAGCATCAAGATCTGGTCCATGGAGAAAGATGCTTTCATCTAAGGACATGAATTTTGTGGGATATACATACAAGAACTTTGAAATCGTCAATGACTATCAAGTTCCTGGAATGGCTGAATTGAAGAAGAAAAGTTCCAGATCAAAGAAGCCATCCATCAAGTCACTCTTCGATGTTGATCCTGAGGGATCAGAGTTGTCTGAGGCTGTAGATGCATCTGCAACCAACCAATCAGAGGAATCCCATAACAAGAATGAATGA	1629	0.3947	MDSARSWLHKFQPREKGKSASRRKEGDGEEDNNGAPMDEAALSNVTKQKVAAAKQYIENHYKEQMKSLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTGHVYAMKKLKKAEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDEDHLYLIMEYLPGGDMMTLLMRKDILTEDETRFYIGETVLAIESIHKHNYIHRDIKPDNLLLDRFGHVRLSDFGLCKPLDCSTLEEADLSVGQNLQGSAQNDGTTPKRTQQEQLEHWQQNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSPEAKDLISKLLCNVPQRLGSNGADEIKAHPFFNGVVWDKLYQMEAAFIPEVNDELDTQNFEKFEESDNHVLKSASRSGPWRKMLSSKDMNFVGYTYKNFEIVNDYQVPGMAELKKKSSRSKKPSIKSLFDVDPEGSELSEAVDASATNQSEESHNKNE	542

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip06g01412	542	PANTHER	SERINE/THREONINE-PROTEIN KINASE	39	520	-	-
	Aip06g01412	542	SMART	pkinase_C_6	417	482	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Aip06g01412	542	ProSiteProfiles	AGC-kinase C-terminal domain profile.	417	490	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Aip06g01412	542	ProSiteProfiles	Protein kinase domain profile.	119	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip06g01412	542	Pfam	Protein kinase C terminal domain	435	480	IPR017892	GO:0004674\|GO:0005524\|GO:0006468
	Aip06g01412	542	Gene3D	Transferase(Phosphotransferase) domain 1	203	434	-	-
	Aip06g01412	542	Gene3D	Phosphorylase Kinase; domain 1	117	445	-	-
	Aip06g01412	542	Pfam	Protein kinase domain	120	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip06g01412	542	SMART	serkin_6	119	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip06g01412	542	SUPERFAMILY	Protein kinase-like (PK-like)	92	459	IPR011009	-
	Aip06g01412	542	CDD	STKc_NDR_like	117	481	-	-
	Aip06g01412	542	MobiDBLite	consensus disorder prediction	1	31	-	-
	Aip06g01412	542	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	39	520	-	-
	Aip06g01412	542	MobiDBLite	consensus disorder prediction	499	542	-	-
	Aip06g01412	542	ProSitePatterns	Protein kinases ATP-binding region signature.	125	148	IPR017441	GO:0005524
	Aip06g01412	542	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	238	250	IPR008271	GO:0004672\|GO:0006468
	Aip06g01412	542	MobiDBLite	consensus disorder prediction	281	300	-	-
	Aip06g01412	542	MobiDBLite	consensus disorder prediction	1	39	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip06g01412	Aip-Chr6	22959074	22963459	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip06g01412	1	513	AGC Kinase Gene Family	AT2G20470	78.185	0.0	843

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Aip06g01412		Pkinase	1.6e-64	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip06g01412	K08790		-	gmx:100805940	929.472

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip06g01412	06	22959074	22963459	Aip02g01407	02	38111411	38123676	PCT
	Aip09g01683	09	39924779	39925135	Aip06g01412	06	22959074	22963459	PCT