Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01409 ATGGCTTCTTTCTTTTCAACGCTTCTTTCTTTGTTTCATCCAATATCTCCGACACTTAAGTTGTTGAAGCCAATTATCGACACCAGTGTTCATTCTGATATATCTGCTGATGAAGAGCTTAGAAAGTTATTTGAGGAACTTGGTCAGTCTGTTGATGAGTTGAGGGAGCTTTCCGAGAATTGGCATCCACTATCCAGTAAATTTTACTTTGTGATGCAAGCTGAACCGTTGATAGCTAGAGTTCAGTCTATAGGGTTCAATATTTTGCAGAAGCTGAGGGCTTCACAGCAATGTCTACCTGATGATTTGGGGTATGACATGACATCAATCATTAAGGAAGCTATAAATGAACAACTGGAAGACGAAGGACCAAGTTCTGAGATTCTAGCAAATATTGCCGAGATCCTCGACTTAAGGTCTAATCAAGATGTTTTGATTGAAGCTGTGGCCCTTGAAAGGTTGAAGGAGAATGCTGAACAAACTGAAAACATTGCAGAAGCCGAGTATATTGATCGAATGCATGAGCGAATCATCATTCTCAAGCAAGCTCAGAGCTCTATCCCGGATTCGGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGACAGATCCAGTCATTGTGTCATCCTGGCAAACCTATGAGCGAGGCAGCGAGCTTTCATCAAGGACTGGATTGATCTTGGGCTCATGGTTTGTCCAAAGACTCAGTCAGACTCTGGTTCATTCCAATCTAATACCTAACTACACTGTAAAAGCATTAATTGTTAATTGGTGCGAAACAAACAATGTGACACTAGTTGATCCAGTAAAGTCCACAAACATAAATCAACTATCTCTCCTTCATGGATCTATTGAGTCTGGTTCAATCGAGGAATCAACTGTTAGAACTTCTTTCAGTGCAAACCACCAAGTGGAAACATCACCATTGCATCCTATTTCAACTCCAGAAGATTCCTTTAGTGGCTTTCCCAATCATCAACTTCACCATCTAGAAGGGAAGCTTCAATCTCAAAACCATAGACAGGTGGTTGAGGATAACCAGATCAGGATAGGGAGGGCTGGGGCTATTAAACCTCTGGTTGAGTTATTAAGTAATGGAACTCCAAGGGGCTGTGGCTGTTCTAGCAAATCTGGCCACAATACTGGTGGAAGAACTGCGATTGGGCAGCAAGGTGGCATTCCTCTTCTGGTTGAGGTTGTTGAGTTGGGTTCTACTAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATTTAAACATGGTACTCCAAGAAGGAGCTGTTCCACCATTAGTAGCTTTATCACCATCAGGCACCGCAAGGGCTAAAGAGAAGTTTTCTCTTTATCTTCTTTGTTTTGTTACAAAATGTGGTGACTGA 1386 0.4206 MASFFSTLLSLFHPISPTLKLLKPIIDTSVHSDISADEELRKLFEELGQSVDELRELSENWHPLSSKFYFVMQAEPLIARVQSIGFNILQKLRASQQCLPDDLGYDMTSIIKEAINEQLEDEGPSSEILANIAEILDLRSNQDVLIEAVALERLKENAEQTENIAEAEYIDRMHERIIILKQAQSSIPDSVPADFCCPLSLELMTDPVIVSSWQTYERGSELSSRTGLILGSWFVQRLSQTLVHSNLIPNYTVKALIVNWCETNNVTLVDPVKSTNINQLSLLHGSIESGSIEESTVRTSFSANHQVETSPLHPISTPEDSFSGFPNHQLHHLEGKLQSQNHRQVVEDNQIRIGRAGAIKPLVELLSNGTPRGCGCSSKSGHNTGGRTAIGQQGGIPLLVEVVELGSTRGKENAAAALLHLNMVLQEGAVPPLVALSPSGTARAKEKFSLYLLCFVTKCGD 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01409 461 SUPERFAMILY RING/U-box 180 271 - -
Aip06g01409 461 SMART Ubox_2 194 260 IPR003613 GO:0004842|GO:0016567
Aip06g01409 461 Gene3D - 328 453 IPR011989 -
Aip06g01409 461 Coils Coil 40 60 - -
Aip06g01409 461 Pfam U-box domain 191 264 IPR003613 GO:0004842|GO:0016567
Aip06g01409 461 PANTHER U BOX DOMAIN-CONTAINING 18 298 - -
Aip06g01409 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 274 IPR013083 -
Aip06g01409 461 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 386 449 - -
Aip06g01409 461 SUPERFAMILY ARM repeat 346 452 IPR016024 -
Aip06g01409 461 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 18 298 - -
Aip06g01409 461 PANTHER U BOX DOMAIN-CONTAINING 344 373 - -
Aip06g01409 461 PANTHER U BOX DOMAIN-CONTAINING 386 449 - -
Aip06g01409 461 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 344 373 - -
Aip06g01409 461 Coils Coil 141 171 - -
Aip06g01409 461 ProSiteProfiles U-box domain profile. 190 267 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01409 Aip-Chr6 22899523 22902164 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01409 315 455 U-box Gene Family AT5G67340 40.132 2.71e-22 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01409 - - adu:107458158 508.064