Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01406 ATGGGGCTTCGAGACATAGGAGCATCACTTCCACCAGGGTTCAGATTCTACCCAAGTGATGAGGAATTGGTTTGCCATTATCTTTATAAGAAGATCACAAACGAGCAACTTCTTAAAGGCACTCTTGTTGAGATTGATTTACACATATGCGAGCCATGGCAGCTTCCAGAGGTGGCAAAGCTAAACGCAAATGAATGGTACTTCTTCAGCTTCAGAGACCGGAAATATGCGACGGGGTTCAGAACGAACAGAGCGACGACAAGTGGTTATTGGAAAGCAACGGGGAAGGATCGAACGGTGCAGGATCCACTGACACAAGAGGTTGTAGGGATGCGCAAGACTCTGGTGTTCTACCGGAACAGAGCTCCCAATGGCATCAAAACTGGCTGGATCATGCATGAGTTTCGCTTGGAGACCCCACACATGCCCCCTAAGGAAGATTGGGTGTTGTGTAGAGTGTTCCACAAAAGCAAAGAAGAAAACAGTGCCAAACTTATCATGTATGATTCCATTTCCACACATCATCAATCATCAAACCCTATGGCATTGGTATCAACCCATCATTTGAACCCCATCAACAACCATAATAACACTTATCATGCCATGAATAATTTCCTTCATCACTTCTCATCATCAAGGGATGATAGTCAAACAAATAACGCCAATAATAATAATAGCAGTGTTACTCAAATTAGTCCCAAGGGTTATGATGGATATGGCTTCATATGGGATCACATGGATCTTGAAGATGGTGGTGTGCCCTCATCAGACTTCCAGGTCGACAATAATAATAATCGTAACAACAACAATAATAATAATATTGCATTGCTATAA 834 0.4269 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKITNEQLLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVQDPLTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEENSAKLIMYDSISTHHQSSNPMALVSTHHLNPINNHNNTYHAMNNFLHHFSSSRDDSQTNNANNNNSSVTQISPKGYDGYGFIWDHMDLEDGGVPSSDFQVDNNNNRNNNNNNNIALL 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01406 277 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 266 - -
Aip06g01406 277 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Aip06g01406 277 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Aip06g01406 277 Gene3D NAC domain 19 162 IPR036093 GO:0003677|GO:0006355
Aip06g01406 277 MobiDBLite consensus disorder prediction 253 277 - -
Aip06g01406 277 MobiDBLite consensus disorder prediction 209 232 - -
Aip06g01406 277 MobiDBLite consensus disorder prediction 256 277 - -
Aip06g01406 277 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 266 - -
Aip06g01406 277 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01406 Aip-Chr6 22707402 22712355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01406 9 225 NAC Transcription Factor Family AT1G76420 49.091 2.40e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip06g01406 NAM 1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01406 - - ahf:112754075 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01406 06 22707402 22712355 Aip02g00993 02 17909017 17915435 PCT