Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01340 ATGGTGAAGAACAACCAAGGAATCTACACCCCTAAGCACCCCAAAGTAGTCGTCCTCTGGGACCTCGACAATAAGCCCCCACGAGGACCCCCATACGACGCCGCACGCTCCCTCACACGCCTCGCAACTCACTTTGGCCACATCGTCGACATCTCTGCCTACGCCAATCGCCACACATTCATCCACCTACCGCAGTGGGTCCTACAGGATCGCCGCCAGAGAAAGCACCTCGACGTGCTGGAACGGAAGGGCCTGGTGGTGCCATCGGAGCCCTACAGGTGTTCCGTCTGCGGGAAAAAGTGTCGCACCAATCTGGATCTGAAGAAGCATTTCAGGCAGTTGCATGAACGAGAGAGGCAGAAGAAGCTTAATCGGATGAGGTCCTTGAAAGGGAAGAAACGGCAGCGTTTTAAAGAGAGGTTTATTCAGGGGAATGAAAAGTATAATGAGGCTGCTAGGTCTCTCATTAGGCCCAAGGTTGGTTATGGGCTAGCTTCAGAGCTGAGGAGGGCTGGGGTATATGTGAAGACTGTGGAGGATAAGCCTCAGGCTGCGGATTGGGCATTGAAGAGGCAGATGCAGCACTCAATGACCAGGGGGATTGATTGGCTGGTTTTGGTTTCAGATGATTCGGATTTCGCAGAGATGATGAGGAGAGCAAGAGAGAGGGAATTGGGGACAGTGGTGGTTGGGGATTGGGATAGGGCACTGGGGAGGCAAGCCGATTTGTGGTTTCCTTGGATTGATGTTGAGAATGGGAATGTTTCGGAGAAGGATCTGGTGATCGAGAAGAACAGGAGTAGGGCTCAAAGGGACGGTTTTGTCGTGGAAGAAGATGATGATGGGTTTTTTTCATTGTCGAGATTTGACTGTGGTGGTGGTCATGGGAGTAGTGATTTGGATGAGCTTGTAGATGAACTTGCAGCAGTGAGGACTGATTTTACTGCGGCAATTTCAGATGAGGATGAAGACGATTATATGTTGGGGAGTAGTGAGGATGAGTACATAGAAGATTATGATGAAGATAGTGATCAAGAAGATGATGGGTTCTATTGA 1056 0.5028 MVKNNQGIYTPKHPKVVVLWDLDNKPPRGPPYDAARSLTRLATHFGHIVDISAYANRHTFIHLPQWVLQDRRQRKHLDVLERKGLVVPSEPYRCSVCGKKCRTNLDLKKHFRQLHERERQKKLNRMRSLKGKKRQRFKERFIQGNEKYNEAARSLIRPKVGYGLASELRRAGVYVKTVEDKPQAADWALKRQMQHSMTRGIDWLVLVSDDSDFAEMMRRARERELGTVVVGDWDRALGRQADLWFPWIDVENGNVSEKDLVIEKNRSRAQRDGFVVEEDDDGFFSLSRFDCGGGHGSSDLDELVDELAAVRTDFTAAISDEDEDDYMLGSSEDEYIEDYDEDSDQEDDGFY 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01340 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 120 IPR013087 -
Aip06g01340 351 SUPERFAMILY beta-beta-alpha zinc fingers 89 120 IPR036236 -
Aip06g01340 351 ProSitePatterns Zinc finger C2H2 type domain signature. 94 115 IPR013087 -
Aip06g01340 351 PANTHER - 1 310 - -
Aip06g01340 351 CDD PIN_LabA-like 102 232 - -
Aip06g01340 351 Coils Coil 112 132 - -
Aip06g01340 351 MobiDBLite consensus disorder prediction 321 351 - -
Aip06g01340 351 Gene3D - 9 249 - -
Aip06g01340 351 SMART c2h2final6 92 115 IPR013087 -
Aip06g01340 351 PANTHER OS06G0166200 PROTEIN 1 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01340 Aip-Chr6 20910698 20912408 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01340 1 287 C2H2 Transcription Factor Family AT5G52010 70.588 1.05e-150 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip06g01340 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01340 - - adu:107495834 650.203