Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01330 ATGGAAGAAGAAGTGAAAGGATATTCCGATAGCAGAGAAGAGGAGGAGGAGGAGGAGGAAGACGAAGCAGCGGAAATCATCCCAATTCCAAACACAAGACAAGAAACCAACAGCAGCGGAAACAGGTTACAGCAGCAGCAAGATACAGCAGTAGCTCCCAATTTCAGTCAGCGGAAGCAGCTAGATTTGATGGAGTTGTCACTAGGGAGCGGGAGCAGCAAGGACGATCGGAATTGGCAGCAAGGAGGAGGAGGAGGAGGAATGGTTGGTTCTTGCTCATCATCATCATCGGAGGCGGTGGAGAAAGAGCACATGTTCGACAAAGTGGTGACCCCAAGCGACGTAGGGAAGCTGAACAGGCTAGTGATACCGAAGCAGCACGCGGAGAAGTACTTTCCATTGGACTCATCCTCCAACGACAAGGGGCTTCTCCTCAACTTCGAGGACAGGAACGGCAAGCTGTGGCGCTTCAGATACTCCTACTGGAACAGCAGCCAGAGCTATGTCATGACCAAAGGCTGGAGCCGCTTCGTTAAGGAGAAGAAGCTCGACGCCGGCGACATTGTCTCCTTCCACCGTGGCCTCGGGGAACTCTATAGACACAGGCTGTACATTGACTGGAGGCGCAGGCCCGACCATCCCCCTCCTGACCCTTCCGCCTCCCTCATCTCCCCTTTCTTCCTTCCTAACCACTACTCCGCCGCCATCACATGGGGCGCCGGCGGCAGGTTCTACTCTCTGCCTTCTCCCACGCCTCCTCCTCGCCACCATCACTTTCATCATCATCAGCACCACCCCCTCGCTACTAATTACAACACCCATATGTATGGCTTTCATCATCATCCAGGTGCTGCAACTGGAACAAGTCATCATCTTCTCAGCGGTTACAATGATCAGCAGCTGAATTCCGGATCTCCTGGACCTCTCTATTACCTGAGGTCACCCCCCTCAATGTCAATTGTTGACCCCAACTTGCATCAGGAGAGAGGGACTGCTATTGCCCCCATGATCATTGATTCTGTGCCGGTTGCTCATCATCATCATCAACAACAGCAACATCAACATGGTGTGGTGCCTAATAGTAGTAACTTTGACAGTACTAATACCGCAGGAAAACGGCTGAGGCTATTTGGGGTCAACATGGAATGTGCTTCTTCTTCTTCTTCTTCTCCAGCTGAAGATCACTCGCATGTGGCAATGTCTAGTTCATTACCATCGTCAAGCAGGTTTGGGGATCAGAGAGGGGATACTACTACTACTACTCCTTCTGTACTTTTTGATTTGGATCCCTCTTTGCAATACCATCACCACCACCGGCATTGA 1323 0.5147 MEEEVKGYSDSREEEEEEEEDEAAEIIPIPNTRQETNSSGNRLQQQQDTAVAPNFSQRKQLDLMELSLGSGSSKDDRNWQQGGGGGGMVGSCSSSSSEAVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNDKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGLGELYRHRLYIDWRRRPDHPPPDPSASLISPFFLPNHYSAAITWGAGGRFYSLPSPTPPPRHHHFHHHQHHPLATNYNTHMYGFHHHPGAATGTSHHLLSGYNDQQLNSGSPGPLYYLRSPPSMSIVDPNLHQERGTAIAPMIIDSVPVAHHHHQQQQHQHGVVPNSSNFDSTNTAGKRLRLFGVNMECASSSSSSPAEDHSHVAMSSSLPSSSRFGDQRGDTTTTTPSVLFDLDPSLQYHHHHRH 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01330 440 MobiDBLite consensus disorder prediction 1 94 - -
Aip06g01330 440 Pfam B3 DNA binding domain 106 210 IPR003340 GO:0003677
Aip06g01330 440 Gene3D - 99 214 IPR015300 -
Aip06g01330 440 ProSiteProfiles B3 DNA-binding domain profile. 106 211 IPR003340 GO:0003677
Aip06g01330 440 MobiDBLite consensus disorder prediction 344 367 - -
Aip06g01330 440 MobiDBLite consensus disorder prediction 30 79 - -
Aip06g01330 440 CDD B3_DNA 104 193 IPR003340 GO:0003677
Aip06g01330 440 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 23 402 IPR044800 GO:0003700
Aip06g01330 440 MobiDBLite consensus disorder prediction 353 367 - -
Aip06g01330 440 MobiDBLite consensus disorder prediction 9 25 - -
Aip06g01330 440 SMART B3_2 106 211 IPR003340 GO:0003677
Aip06g01330 440 SUPERFAMILY DNA-binding pseudobarrel domain 103 211 IPR015300 -
Aip06g01330 440 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 23 402 - -
Aip06g01330 440 MobiDBLite consensus disorder prediction 384 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01330 Aip-Chr6 20793900 20795307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01330 96 386 RAV Transcription Factor Family AT2G46870 48.333 9.26e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip06g01330 B3 4.9e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01330 - - gsj:114390989 383.259