Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01326 ATGTTCAGTTTCAGAGGCGTGGATCTCGATGCACTCTTGGACATGTCCACCGATGAAGTCGTTAAGCTCTTCACTATTCGTGCTCGCAGAAGGTTTCAGCGCGGTTTGACTCACAAGCCTATGGCACTCATCAAGAAGCTGCGTAAGGCGATTCCTTGCTATTTTCATTCCAAGTACAAGTCAAAGATATTTAGCACCTATACTGATATTGGCACATCTTGCAAAATCCCTTATGGCCATGGATCCATTTATAGATTCTTCAGCCAAGATGTTGTAAAAGTTGGGGATATCGTCATCAAAGACCAAGTACAATATGATAGATCAAGGATTGATGTTGGAGATGTTCTACTTGCAAATAGATCAACAAGTTCTCTTATATTTCTGTGA 387 0.4109 MFSFRGVDLDALLDMSTDEVVKLFTIRARRRFQRGLTHKPMALIKKLRKAIPCYFHSKYKSKIFSTYTDIGTSCKIPYGHGSIYRFFSQDVVKVGDIVIKDQVQYDRSRIDVGDVLLANRSTSSLIFL 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01326 128 Coils Coil 126 128 - -
Aip06g01326 128 PANTHER 40S RIBOSOMAL PROTEIN S15-6 2 62 - -
Aip06g01326 128 Pfam Eukaryotic aspartyl protease 48 103 IPR033121 -
Aip06g01326 128 SUPERFAMILY Acid proteases 50 104 IPR021109 -
Aip06g01326 128 Gene3D 30s Ribosomal Protein S19; Chain A 1 94 IPR023575 GO:0003735|GO:0005840|GO:0006412
Aip06g01326 128 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 2 62 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01326 Aip-Chr6 20714142 20716696 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01326 2 50 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 85.714 7.90e-23 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01326 K02958 - aip:107646641 204.912